Wall clock time and date at job start Mon Mar 30 2020 02:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39594 * 120.10481 * 33.93418 * 3 2 1 5 5 C 1.38000 * 120.00561 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.22332 * 359.97438 * 5 4 3 7 7 C 1.38986 * 120.21194 * 359.97438 * 6 5 4 8 8 N 1.39692 * 120.00692 * 179.97438 * 7 6 5 9 9 C 1.46493 * 120.00050 * 0.02562 * 8 7 6 10 10 H 1.08999 * 109.47577 * 325.00130 * 9 8 7 11 11 C 1.53003 * 109.47078 * 84.99873 * 9 8 7 12 12 C 1.50703 * 109.47115 * 204.99837 * 9 8 7 13 13 H 1.08002 * 120.00187 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99451 * 180.02562 * 12 9 8 15 15 N 1.31506 * 120.00449 * 0.02562 * 14 12 9 16 16 Si 1.86809 * 119.99312 * 179.97438 * 14 12 9 17 17 H 1.48492 * 109.47145 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46842 * 119.99859 * 16 14 12 19 19 H 1.48499 * 109.47170 * 239.99680 * 16 14 12 20 20 C 1.38692 * 119.98599 * 0.02562 * 7 6 5 21 21 H 4.52045 * 14.03220 * 0.02562 * 4 2 1 22 22 H 1.07997 * 119.99872 * 0.03574 * 4 3 2 23 23 H 1.08003 * 119.89525 * 179.97438 * 5 4 3 24 24 H 1.08000 * 119.89691 * 179.72355 * 6 5 4 25 25 H 0.97005 * 119.99877 * 180.02562 * 8 7 6 26 26 H 1.09007 * 109.47031 * 179.97438 * 11 9 8 27 27 H 1.08999 * 109.47218 * 299.99830 * 11 9 8 28 28 H 1.08997 * 109.46964 * 60.00458 * 11 9 8 29 29 H 0.97007 * 120.00092 * 180.02562 * 15 14 12 30 30 H 1.08005 * 120.10740 * 179.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3066 -1.0010 -0.6742 5 6 4.6866 -0.9987 -0.6724 6 6 5.3800 -0.0064 -0.0049 7 6 4.6917 0.9959 0.6684 8 7 5.3966 1.9963 1.3419 9 6 6.8615 1.9894 1.3382 10 1 7.2201 0.9602 1.3564 11 6 7.3716 2.6848 0.0744 12 6 7.3704 2.7202 2.5539 13 1 6.6725 3.1468 3.2591 14 6 8.7272 2.8441 2.7659 15 7 9.5771 2.3252 1.9070 16 14 9.3580 3.7507 4.2725 17 1 8.2074 4.2371 5.0753 18 1 10.1812 2.8290 5.0962 19 1 10.1870 4.9058 3.8442 20 6 3.3048 1.0021 0.6723 21 1 -1.0500 -0.0004 -0.0009 22 1 2.7687 -1.7777 -1.1973 23 1 5.2269 -1.7748 -1.1942 24 1 6.4599 -0.0122 -0.0032 25 1 4.9161 2.6956 1.8121 26 1 8.4616 2.6800 0.0718 27 1 7.0035 2.1562 -0.8049 28 1 7.0131 3.7140 0.0563 29 1 10.5316 2.4121 2.0564 30 1 2.7679 1.7798 1.1952 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871065.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:21 Heat of formation + Delta-G solvation = 57.492617 kcal Electronic energy + Delta-G solvation = -13248.409149 eV Core-core repulsion = 11009.034975 eV Total energy + Delta-G solvation = -2239.374174 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.35678 -37.45361 -34.95873 -34.08388 -31.90790 -30.79601 -28.81880 -27.26709 -24.46477 -23.18238 -22.12314 -19.50007 -18.81866 -17.40731 -17.05495 -16.72165 -15.95277 -15.39053 -14.99430 -14.49299 -14.36279 -14.23744 -13.70065 -13.11556 -12.97915 -12.82771 -12.46267 -12.37267 -12.18836 -12.06751 -11.86745 -11.37518 -11.08485 -10.78904 -10.49078 -9.48376 -8.23205 -8.10172 -6.34437 0.13227 0.76264 1.41001 1.43096 1.54066 1.85026 2.21245 2.36888 2.89958 3.10756 3.21259 3.49102 4.10374 4.33321 4.43271 4.66185 4.72201 4.77889 4.93440 4.99806 5.11629 5.29273 5.40668 5.47200 5.59477 5.64667 5.70572 5.84180 6.06311 6.12339 6.53309 6.64961 6.83085 7.17606 7.38015 8.86230 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.051982 B = 0.006287 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.520622 B = 4452.543036 C = 4779.260436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.195 4.195 3 C 0.041 3.959 4 C -0.174 4.174 5 C -0.066 4.066 6 C -0.214 4.214 7 C 0.216 3.784 8 N -0.731 5.731 9 C 0.275 3.725 10 H 0.013 0.987 11 C -0.139 4.139 12 C -0.548 4.548 13 H 0.060 0.940 14 C 0.020 3.980 15 N -0.912 5.912 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.278 1.278 20 C -0.198 4.198 21 H 0.265 0.735 22 H 0.140 0.860 23 H 0.148 0.852 24 H 0.110 0.890 25 H 0.394 0.606 26 H 0.068 0.932 27 H 0.024 0.976 28 H 0.027 0.973 29 H 0.266 0.734 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.964 -4.026 -3.675 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.195 4.195 3 C 0.040 3.960 4 C -0.194 4.194 5 C -0.084 4.084 6 C -0.237 4.237 7 C 0.109 3.891 8 N -0.356 5.356 9 C 0.172 3.828 10 H 0.031 0.969 11 C -0.198 4.198 12 C -0.586 4.586 13 H 0.078 0.922 14 C -0.180 4.180 15 N -0.551 5.551 16 Si 0.791 3.209 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.204 1.204 20 C -0.222 4.222 21 H 0.281 0.719 22 H 0.157 0.843 23 H 0.166 0.834 24 H 0.128 0.872 25 H 0.228 0.772 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.511 -4.034 -3.698 12.746 hybrid contribution 0.529 0.829 0.922 1.348 sum -10.983 -3.206 -2.776 11.773 Atomic orbital electron populations 1.25776 0.96360 0.97414 0.97275 1.20466 0.92606 1.03150 1.03245 1.15857 0.87127 0.95336 0.97695 1.21046 0.93884 1.00238 1.04245 1.21037 0.93913 0.96970 0.96478 1.20978 0.99884 0.97859 1.04945 1.18074 0.91102 0.89023 0.90902 1.45282 1.06697 1.27819 1.55760 1.18390 0.75534 0.95210 0.93704 0.96898 1.22003 1.02681 0.98321 0.96790 1.21560 0.92440 1.36678 1.07953 0.92220 1.25656 0.96801 0.96107 0.99476 1.69996 1.02705 1.45508 1.36881 0.85394 0.78235 0.78214 0.79076 1.19283 1.20568 1.20352 1.20609 0.91508 1.02390 1.07663 0.71909 0.84252 0.83436 0.87194 0.77245 0.91369 0.95655 0.95355 0.92470 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 19.25 74.32 1.43 -1.69 16 2 C -0.19 -5.49 13.24 30.02 0.40 -5.09 16 3 C 0.04 1.32 5.72 -21.43 -0.12 1.19 16 4 C -0.17 -5.18 9.75 22.54 0.22 -4.96 16 5 C -0.07 -2.04 10.02 22.21 0.22 -1.82 16 6 C -0.21 -8.20 8.85 22.45 0.20 -8.00 16 7 C 0.22 8.59 6.63 38.18 0.25 8.84 16 8 N -0.73 -31.59 5.24 -322.62 -1.69 -33.28 16 9 C 0.28 13.78 2.25 44.25 0.10 13.88 16 10 H 0.01 0.73 6.47 -2.39 -0.02 0.71 16 11 C -0.14 -6.76 9.20 71.98 0.66 -6.10 16 12 C -0.55 -29.32 8.73 25.60 0.22 -29.10 16 13 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 14 C 0.02 1.06 5.30 84.66 0.45 1.51 16 15 N -0.91 -50.73 11.32 21.45 0.24 -50.48 16 16 Si 0.97 42.29 29.54 68.60 2.03 44.32 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 20 C -0.20 -7.03 9.60 22.66 0.22 -6.82 16 21 H 0.26 2.54 7.80 -4.42 -0.03 2.51 16 22 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 23 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 24 H 0.11 4.59 6.10 -2.91 -0.02 4.57 16 25 H 0.39 15.92 8.55 -92.70 -0.79 15.13 16 26 H 0.07 3.61 6.07 -2.38 -0.01 3.60 16 27 H 0.02 1.12 7.71 -2.39 -0.02 1.10 16 28 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.27 13.97 8.31 -92.70 -0.77 13.20 16 30 H 0.12 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -59.86 267.02 5.17 -54.69 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.34 Total: 22.90 kcal Atomic # 6 Polarization: -42.40 SS G_CDS: 4.25 Total: -38.15 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -1.45 Total: -83.76 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -59.86 5.17 -54.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871065.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.181 kcal (2) G-P(sol) polarization free energy of solvation -59.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds