Wall clock time and date at job start Mon Mar 30 2020 03:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.50700 * 109.47410 * 120.00071 * 2 1 3 5 5 H 1.07990 * 120.00516 * 119.99519 * 4 2 1 6 6 C 1.37884 * 119.99809 * 300.00083 * 4 2 1 7 7 N 1.31520 * 119.99886 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00301 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47091 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46992 * 119.99706 * 8 6 4 11 11 H 1.48500 * 109.47394 * 239.99926 * 8 6 4 12 12 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 13 13 C 1.46906 * 110.99888 * 84.99977 * 12 2 1 14 14 C 1.52999 * 109.46897 * 179.97438 * 13 12 2 15 15 H 1.08994 * 109.52742 * 305.13234 * 14 13 12 16 16 C 1.53142 * 109.52320 * 184.99974 * 14 13 12 17 17 O 1.43074 * 109.15499 * 184.78815 * 16 14 13 18 18 C 1.43075 * 113.59135 * 57.95127 * 17 16 14 19 19 C 1.53142 * 109.15035 * 302.05130 * 18 17 16 20 20 O 1.43071 * 109.15125 * 55.31206 * 19 18 17 21 21 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 23 23 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 24 24 H 0.97000 * 120.00205 * 180.02562 * 7 6 4 25 25 H 1.00902 * 111.00533 * 321.04383 * 12 2 1 26 26 H 1.09000 * 109.47033 * 300.00113 * 13 12 2 27 27 H 1.09001 * 109.46544 * 60.00058 * 13 12 2 28 28 H 1.09008 * 109.52709 * 304.69047 * 16 14 13 29 29 H 1.09004 * 109.52505 * 64.81629 * 16 14 13 30 30 H 1.08997 * 109.52224 * 61.95577 * 18 17 16 31 31 H 1.08998 * 109.52509 * 182.08023 * 18 17 16 32 32 H 1.09003 * 109.52106 * 175.21612 * 19 18 17 33 33 H 1.08997 * 109.52405 * 295.40586 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6039 10 1 3.1466 -0.1872 4.8164 11 1 1.1661 -1.5865 4.8161 12 7 2.0197 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3469 14 6 2.5962 -0.5331 -3.5741 15 1 3.5509 -1.0035 -3.3390 16 6 2.7807 0.4456 -4.7375 17 8 3.1533 -0.2842 -5.9103 18 6 2.2045 -1.2869 -6.2864 19 6 2.0200 -2.2655 -5.1230 20 8 1.6474 -1.5357 -3.9503 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 0.7087 1.1613 3.4844 25 1 1.4496 -1.4981 -1.4100 26 1 1.0870 0.6162 -2.5525 27 1 2.7589 1.0461 -2.1182 28 1 1.8456 0.9753 -4.9198 29 1 3.5632 1.1629 -4.4896 30 1 1.2501 -0.8155 -6.5208 31 1 2.5699 -1.8243 -7.1614 32 1 1.2367 -2.9820 -5.3705 33 1 2.9550 -2.7952 -4.9408 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038061668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:28 Heat of formation + Delta-G solvation = -93.907198 kcal Electronic energy + Delta-G solvation = -14846.628356 eV Core-core repulsion = 12293.380073 eV Total energy + Delta-G solvation = -2553.248282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.83338 -36.39400 -35.53492 -32.98755 -31.36961 -28.92478 -27.47850 -25.15323 -24.66638 -22.49659 -20.83953 -20.11456 -16.76152 -16.64634 -16.24322 -15.97321 -15.23031 -15.01811 -14.62069 -13.76166 -13.41734 -13.20005 -12.85254 -12.34934 -11.87772 -11.62323 -11.42185 -11.21727 -10.91224 -10.79394 -10.62592 -10.41789 -10.27112 -10.09683 -9.80399 -9.09403 -8.90604 -8.33488 -7.19533 -5.95478 -3.98425 3.33978 3.41437 3.47291 3.69513 3.79462 4.45354 4.58997 4.94394 4.97827 5.07401 5.19834 5.36107 5.37544 5.48794 5.60920 5.67327 5.78055 5.91567 6.19828 6.32272 6.74134 6.89750 6.93645 7.14285 7.22268 7.39820 7.78632 7.92418 8.30889 8.59956 8.66057 9.09376 9.66860 11.11720 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.061819 B = 0.005967 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.827092 B = 4691.652874 C = 4779.799922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.493 4.493 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.682 5.682 13 C 0.070 3.930 14 C 0.058 3.942 15 H 0.076 0.924 16 C 0.030 3.970 17 O -0.383 6.383 18 C 0.024 3.976 19 C 0.026 3.974 20 O -0.372 6.372 21 H 0.028 0.972 22 H 0.088 0.912 23 H 0.005 0.995 24 H 0.258 0.742 25 H 0.333 0.667 26 H 0.027 0.973 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 -2.502 -14.687 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.532 4.532 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.312 5.312 13 C -0.060 4.060 14 C 0.000 4.000 15 H 0.094 0.906 16 C -0.047 4.047 17 O -0.301 6.301 18 C -0.053 4.053 19 C -0.052 4.052 20 O -0.292 6.292 21 H 0.047 0.953 22 H 0.107 0.893 23 H 0.024 0.976 24 H 0.068 0.932 25 H 0.150 0.850 26 H 0.045 0.955 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.953 -2.300 -14.368 14.682 hybrid contribution -0.774 -0.302 0.614 1.033 sum 1.178 -2.602 -13.755 14.048 Atomic orbital electron populations 1.22415 1.00666 0.99270 1.00378 1.19191 0.89690 0.94359 0.86568 0.94960 1.21206 1.30008 1.12363 0.89590 0.91894 1.24963 0.95377 0.95241 0.99062 1.69900 1.37454 1.23320 1.23186 0.86444 0.78481 0.79653 0.82830 1.19748 1.21167 1.21224 1.60811 1.58359 1.09106 1.02941 1.21830 0.99212 0.95484 0.89483 1.22952 0.93648 0.89322 0.94125 0.90606 1.23287 1.01817 0.94317 0.85274 1.88058 1.46649 1.50588 1.44837 1.23237 0.93676 0.90613 0.97818 1.23165 1.01711 0.94298 0.85991 1.88122 1.46631 1.50540 1.43863 0.95307 0.89325 0.97636 0.93167 0.84960 0.95466 0.90222 0.92279 0.87636 0.92406 0.88171 0.88177 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.94 37.16 0.33 -3.84 16 2 C 0.21 5.39 2.57 -68.87 -0.18 5.21 16 3 H 0.03 0.90 7.80 -51.93 -0.40 0.49 16 4 C -0.49 -13.91 8.84 -34.44 -0.30 -14.22 16 5 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 6 C 0.05 1.51 5.30 -17.81 -0.09 1.42 16 7 N -0.90 -26.02 11.32 55.43 0.63 -25.40 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 N -0.68 -15.05 6.23 -107.95 -0.67 -15.72 16 13 C 0.07 1.28 5.19 -3.82 -0.02 1.26 16 14 C 0.06 0.90 3.08 -26.66 -0.08 0.81 16 15 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 16 C 0.03 0.40 6.34 37.23 0.24 0.64 16 17 O -0.38 -5.13 10.85 -48.80 -0.53 -5.66 16 18 C 0.02 0.25 7.05 37.23 0.26 0.52 16 19 C 0.03 0.30 7.05 37.23 0.26 0.57 16 20 O -0.37 -5.90 10.03 -48.80 -0.49 -6.39 16 21 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 22 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 23 H 0.00 0.11 7.45 -51.93 -0.39 -0.28 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.33 7.32 8.05 -39.29 -0.32 7.00 16 26 H 0.03 0.51 7.44 -51.93 -0.39 0.12 16 27 H 0.08 1.40 8.06 -51.93 -0.42 0.99 16 28 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 269.75 15.07 4.07 4.07 Total: -1.00 -30.16 269.75 -6.76 -36.91 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.15 Total: 3.09 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 0.41 Total: -7.63 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.05 Total: -41.12 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -1.02 Total: -12.04 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.16 -6.76 -36.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038061668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.993 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds