Wall clock time and date at job start Mon Mar 30 2020 03:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.50700 * 109.47410 * 120.00071 * 2 1 3 5 5 H 1.07990 * 120.00516 * 119.99519 * 4 2 1 6 6 C 1.37884 * 119.99809 * 300.00083 * 4 2 1 7 7 N 1.31520 * 119.99886 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00301 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47091 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46992 * 119.99706 * 8 6 4 11 11 H 1.48500 * 109.47394 * 239.99926 * 8 6 4 12 12 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 13 13 C 1.46906 * 110.99888 * 84.99977 * 12 2 1 14 14 C 1.52999 * 109.46897 * 179.97438 * 13 12 2 15 15 H 1.08994 * 109.52742 * 305.13234 * 14 13 12 16 16 C 1.53142 * 109.52320 * 184.99974 * 14 13 12 17 17 O 1.43074 * 109.15499 * 184.78815 * 16 14 13 18 18 C 1.43075 * 113.59135 * 57.95127 * 17 16 14 19 19 C 1.53142 * 109.15035 * 302.05130 * 18 17 16 20 20 O 1.43071 * 109.15125 * 55.31206 * 19 18 17 21 21 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 23 23 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 24 24 H 0.97000 * 120.00205 * 180.02562 * 7 6 4 25 25 H 1.00902 * 111.00533 * 321.04383 * 12 2 1 26 26 H 1.09000 * 109.47033 * 300.00113 * 13 12 2 27 27 H 1.09001 * 109.46544 * 60.00058 * 13 12 2 28 28 H 1.09008 * 109.52709 * 304.69047 * 16 14 13 29 29 H 1.09004 * 109.52505 * 64.81629 * 16 14 13 30 30 H 1.08997 * 109.52224 * 61.95577 * 18 17 16 31 31 H 1.08998 * 109.52509 * 182.08023 * 18 17 16 32 32 H 1.09003 * 109.52106 * 175.21612 * 19 18 17 33 33 H 1.08997 * 109.52405 * 295.40586 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6039 10 1 3.1466 -0.1872 4.8164 11 1 1.1661 -1.5865 4.8161 12 7 2.0197 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3469 14 6 2.5962 -0.5331 -3.5741 15 1 3.5509 -1.0035 -3.3390 16 6 2.7807 0.4456 -4.7375 17 8 3.1533 -0.2842 -5.9103 18 6 2.2045 -1.2869 -6.2864 19 6 2.0200 -2.2655 -5.1230 20 8 1.6474 -1.5357 -3.9503 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 0.7087 1.1613 3.4844 25 1 1.4496 -1.4981 -1.4100 26 1 1.0870 0.6162 -2.5525 27 1 2.7589 1.0461 -2.1182 28 1 1.8456 0.9753 -4.9198 29 1 3.5632 1.1629 -4.4896 30 1 1.2501 -0.8155 -6.5208 31 1 2.5699 -1.8243 -7.1614 32 1 1.2367 -2.9820 -5.3705 33 1 2.9550 -2.7952 -4.9408 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038061668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:28 Heat of formation + Delta-G solvation = -115.928533 kcal Electronic energy + Delta-G solvation = -14847.583273 eV Core-core repulsion = 12293.380073 eV Total energy + Delta-G solvation = -2554.203199 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.90535 -37.95070 -36.86697 -34.77466 -32.90033 -30.35287 -28.85889 -27.25068 -25.96759 -23.73641 -22.12985 -21.95356 -18.47356 -17.81336 -17.52559 -17.14937 -16.74976 -16.34432 -16.11045 -15.23902 -14.99348 -14.71264 -14.41412 -13.71130 -13.42798 -13.24032 -12.92230 -12.77263 -12.70992 -12.33536 -12.27006 -12.15398 -11.88306 -11.66011 -11.30926 -11.00055 -10.48907 -10.10959 -8.99297 -8.09650 -6.20833 1.42933 1.44373 1.57190 2.44737 2.70153 2.76844 3.18606 3.39416 3.84058 4.00837 4.04587 4.16456 4.23609 4.39157 4.51913 4.60943 4.63296 4.74819 4.78426 4.88512 4.94263 4.96813 5.10810 5.40150 5.68897 5.80628 5.98902 6.12224 6.26504 6.63821 6.79843 6.93703 7.49156 8.96328 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.061819 B = 0.005967 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.827092 B = 4691.652874 C = 4779.799922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.006 0.994 4 C -0.516 4.516 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.963 3.037 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.685 5.685 13 C 0.071 3.929 14 C 0.066 3.934 15 H 0.066 0.934 16 C 0.036 3.964 17 O -0.395 6.395 18 C 0.021 3.979 19 C 0.019 3.981 20 O -0.398 6.398 21 H 0.029 0.971 22 H 0.063 0.937 23 H 0.023 0.977 24 H 0.261 0.739 25 H 0.334 0.666 26 H 0.025 0.975 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.064 0.936 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 -3.130 -15.570 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.105 3.895 3 H 0.024 0.976 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.789 3.211 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.315 5.315 13 C -0.059 4.059 14 C 0.008 3.992 15 H 0.084 0.916 16 C -0.041 4.041 17 O -0.314 6.314 18 C -0.055 4.055 19 C -0.057 4.057 20 O -0.317 6.317 21 H 0.048 0.952 22 H 0.082 0.918 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.151 0.849 26 H 0.043 0.957 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.188 -2.932 -15.278 15.710 hybrid contribution -0.863 -0.132 0.815 1.194 sum 1.325 -3.065 -14.463 14.843 Atomic orbital electron populations 1.22225 1.00094 0.99103 0.99993 1.18978 0.90032 0.92905 0.87583 0.97573 1.21474 1.30413 1.12440 0.91089 0.92860 1.25737 0.95434 0.95901 1.01929 1.70016 1.38032 1.24308 1.23986 0.85429 0.78053 0.78560 0.79081 1.19427 1.20586 1.20551 1.60684 1.57952 1.09592 1.03322 1.21868 0.99336 0.95325 0.89333 1.22736 0.92764 0.89770 0.93914 0.91647 1.23225 1.02693 0.93782 0.84380 1.88047 1.47679 1.51198 1.44452 1.23443 0.93811 0.90048 0.98207 1.23440 1.02624 0.94641 0.85021 1.88070 1.46960 1.50958 1.45751 0.95228 0.91814 0.95779 0.92950 0.84924 0.95668 0.89975 0.91715 0.86274 0.91788 0.85270 0.85877 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.71 8.94 71.98 0.64 -7.07 16 2 C 0.21 11.12 2.57 44.17 0.11 11.23 16 3 H 0.01 0.36 7.80 -2.39 -0.02 0.34 16 4 C -0.52 -29.35 8.84 25.60 0.23 -29.13 16 5 H 0.05 3.07 7.81 -2.92 -0.02 3.04 16 6 C 0.01 0.45 5.30 84.66 0.45 0.90 16 7 N -0.92 -53.78 11.32 21.45 0.24 -53.54 16 8 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 N -0.69 -30.33 6.23 -495.45 -3.09 -33.42 16 13 C 0.07 2.57 5.19 86.30 0.45 3.02 16 14 C 0.07 2.00 3.08 30.64 0.09 2.09 16 15 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 16 C 0.04 0.90 6.34 72.03 0.46 1.35 16 17 O -0.39 -9.70 10.85 -136.00 -1.48 -11.17 16 18 C 0.02 0.40 7.05 72.03 0.51 0.91 16 19 C 0.02 0.41 7.05 72.03 0.51 0.92 16 20 O -0.40 -12.09 10.03 -136.00 -1.36 -13.45 16 21 H 0.03 1.41 8.13 -2.38 -0.02 1.39 16 22 H 0.06 3.50 6.07 -2.39 -0.01 3.49 16 23 H 0.02 1.06 7.45 -2.39 -0.02 1.04 16 24 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 25 H 0.33 14.63 8.05 -89.69 -0.72 13.91 16 26 H 0.03 0.92 7.44 -2.39 -0.02 0.90 16 27 H 0.08 2.88 8.06 -2.39 -0.02 2.86 16 28 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -63.52 269.75 0.15 -63.37 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.36 Total: 17.42 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 3.45 Total: -15.77 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -2.84 Total: -86.96 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -2.84 Total: -24.62 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -63.52 0.15 -63.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038061668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.563 kcal (2) G-P(sol) polarization free energy of solvation -63.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds