Wall clock time and date at job start Mon Mar 30 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46900 * 111.00000 * 275.00251 * 12 2 1 14 14 C 1.53000 * 109.47300 * 179.97438 * 13 12 2 15 15 H 1.09007 * 109.51763 * 59.99864 * 14 13 12 16 16 C 1.53141 * 109.52808 * 180.12935 * 14 13 12 17 17 O 1.43079 * 109.14585 * 175.14531 * 16 14 13 18 18 C 1.43074 * 113.65094 * 302.15314 * 17 16 14 19 19 C 1.53150 * 109.15122 * 57.91561 * 18 17 16 20 20 O 1.43069 * 109.14570 * 304.68699 * 19 18 17 21 21 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.00892 * 110.99877 * 38.95708 * 12 2 1 26 26 H 1.09002 * 109.47272 * 300.00084 * 13 12 2 27 27 H 1.09001 * 109.47006 * 60.00062 * 13 12 2 28 28 H 1.09008 * 109.52261 * 295.12073 * 16 14 13 29 29 H 1.08999 * 109.52162 * 55.31067 * 16 14 13 30 30 H 1.08997 * 109.52301 * 298.01057 * 18 17 16 31 31 H 1.09000 * 109.57943 * 177.84708 * 18 17 16 32 32 H 1.08993 * 109.52075 * 184.78863 * 19 18 17 33 33 H 1.09002 * 109.57557 * 64.62000 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5329 3.5746 15 1 3.5904 -0.9274 3.3701 16 6 2.6578 0.4192 4.7724 17 8 3.0287 -0.3196 5.9402 18 6 2.1396 -1.3989 6.2430 19 6 2.0784 -2.3507 5.0448 20 8 1.7059 -1.6122 3.8774 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 0.7088 1.1611 -3.4845 25 1 1.4496 -1.4978 1.4101 26 1 2.7588 1.0463 2.1182 27 1 1.0870 0.6164 2.5525 28 1 3.3977 1.1965 4.5814 29 1 1.6800 0.8756 4.9265 30 1 1.1440 -1.0046 6.4463 31 1 2.5037 -1.9376 7.1178 32 1 1.3391 -3.1287 5.2350 33 1 3.0562 -2.8071 4.8905 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038061671.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:34 Heat of formation + Delta-G solvation = -115.585579 kcal Electronic energy + Delta-G solvation = -14857.969220 eV Core-core repulsion = 12303.780892 eV Total energy + Delta-G solvation = -2554.188328 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.90258 -37.94686 -36.85843 -34.76950 -32.89945 -30.34494 -28.87065 -27.24460 -25.95782 -23.74046 -22.11012 -21.95723 -18.46931 -17.79943 -17.51816 -17.16005 -16.74507 -16.34924 -16.10924 -15.24334 -14.98584 -14.70480 -14.41395 -13.70829 -13.43022 -13.21408 -12.91339 -12.77361 -12.71089 -12.35593 -12.27302 -12.14733 -11.87475 -11.65134 -11.31235 -11.00993 -10.47786 -10.10703 -8.98255 -8.09086 -6.20443 1.44325 1.46289 1.54149 2.44914 2.70017 2.76859 3.18980 3.39659 3.84264 4.00578 4.04891 4.16514 4.24386 4.38506 4.51884 4.61009 4.63616 4.75227 4.78476 4.88496 4.95045 4.96405 5.10989 5.40312 5.68898 5.80643 5.98984 6.12465 6.26930 6.64699 6.80886 6.93798 7.49398 8.96446 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.061664 B = 0.006010 C = 0.005869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.966235 B = 4657.578289 C = 4769.988331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.006 0.994 4 C -0.518 4.518 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.963 3.037 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.272 1.272 12 N -0.685 5.685 13 C 0.071 3.929 14 C 0.067 3.933 15 H 0.065 0.935 16 C 0.037 3.963 17 O -0.395 6.395 18 C 0.022 3.978 19 C 0.019 3.981 20 O -0.397 6.397 21 H 0.028 0.972 22 H 0.023 0.977 23 H 0.063 0.937 24 H 0.262 0.738 25 H 0.334 0.666 26 H 0.081 0.919 27 H 0.025 0.975 28 H 0.120 0.880 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.506 -3.260 15.507 15.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.106 3.894 3 H 0.024 0.976 4 C -0.557 4.557 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.788 3.212 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.198 1.198 12 N -0.315 5.315 13 C -0.059 4.059 14 C 0.008 3.992 15 H 0.083 0.917 16 C -0.041 4.041 17 O -0.314 6.314 18 C -0.055 4.055 19 C -0.057 4.057 20 O -0.317 6.317 21 H 0.047 0.953 22 H 0.042 0.958 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.152 0.848 26 H 0.100 0.900 27 H 0.043 0.957 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.100 -3.058 15.211 15.656 hybrid contribution -0.838 -0.148 -0.807 1.173 sum 1.261 -3.206 14.404 14.810 Atomic orbital electron populations 1.22226 1.00106 0.99077 1.00000 1.18971 0.90019 0.92875 0.87581 0.97615 1.21421 1.30592 1.12537 0.91123 0.92865 1.25733 0.95413 0.95891 1.01904 1.70002 1.37926 1.24247 1.24100 0.85541 0.78654 0.78606 0.78359 1.20838 1.19847 1.19762 1.60657 1.58002 1.09595 1.03277 1.21876 0.99299 0.95306 0.89399 1.22738 0.93827 0.88355 0.94241 0.91693 1.23232 1.02592 0.94024 0.84220 1.88040 1.52534 1.45919 1.44891 1.23439 0.94918 0.88524 0.98599 1.23439 1.02477 0.94828 0.84979 1.88065 1.51774 1.45551 1.46268 0.95261 0.95776 0.91798 0.92938 0.84840 0.90041 0.95682 0.86207 0.91774 0.91816 0.85266 0.85920 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.71 8.94 71.98 0.64 -7.07 16 2 C 0.21 11.16 2.57 44.17 0.11 11.28 16 3 H 0.01 0.34 7.80 -2.38 -0.02 0.32 16 4 C -0.52 -29.55 8.84 25.60 0.23 -29.32 16 5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.49 5.30 84.66 0.45 0.94 16 7 N -0.92 -53.81 11.32 21.45 0.24 -53.56 16 8 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 9 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.69 -30.40 6.23 -495.44 -3.09 -33.49 16 13 C 0.07 2.56 5.22 86.30 0.45 3.01 16 14 C 0.07 2.01 3.11 30.64 0.10 2.10 16 15 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 16 C 0.04 0.90 6.34 72.03 0.46 1.35 16 17 O -0.39 -9.68 10.84 -136.00 -1.47 -11.16 16 18 C 0.02 0.41 7.05 72.03 0.51 0.92 16 19 C 0.02 0.41 7.05 72.03 0.51 0.92 16 20 O -0.40 -12.12 9.83 -136.00 -1.34 -13.45 16 21 H 0.03 1.40 8.13 -2.39 -0.02 1.38 16 22 H 0.02 1.06 7.45 -2.39 -0.02 1.04 16 23 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16 24 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 25 H 0.33 14.72 7.87 -89.70 -0.71 14.02 16 26 H 0.08 2.87 8.06 -2.39 -0.02 2.85 16 27 H 0.03 0.91 7.44 -2.39 -0.02 0.89 16 28 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -63.52 269.45 0.20 -63.32 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.38 Total: 17.63 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 3.45 Total: -15.87 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -2.85 Total: -87.06 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -2.81 Total: -24.61 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.52 0.20 -63.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038061671.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.267 kcal (2) G-P(sol) polarization free energy of solvation -63.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds