Wall clock time and date at job start Mon Mar 30 2020 02:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46903 * 110.99673 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.46899 * 180.02562 * 12 11 10 14 14 H 1.08999 * 109.52054 * 304.86636 * 13 12 11 15 15 C 1.53144 * 109.52253 * 184.67052 * 13 12 11 16 16 O 1.43071 * 109.14793 * 184.78483 * 15 13 12 17 17 C 1.43071 * 113.59589 * 57.95480 * 16 15 13 18 18 C 1.53144 * 109.14922 * 302.04448 * 17 16 15 19 19 O 1.43074 * 109.15175 * 55.31120 * 18 17 16 20 20 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 22 22 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 23 23 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 24 24 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 25 25 H 1.00897 * 111.00027 * 303.95091 * 11 10 9 26 26 H 1.09003 * 109.46666 * 299.99374 * 12 11 10 27 27 H 1.08993 * 109.47307 * 59.99613 * 12 11 10 28 28 H 1.08998 * 109.52167 * 304.68602 * 15 13 12 29 29 H 1.08997 * 109.52496 * 64.88495 * 15 13 12 30 30 H 1.09001 * 109.52693 * 182.14836 * 17 16 15 31 31 H 1.08997 * 109.58037 * 61.97788 * 17 16 15 32 32 H 1.09002 * 109.52647 * 295.41035 * 18 17 16 33 33 H 1.09003 * 109.58230 * 175.24739 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 7 5.4905 -2.6367 0.0001 12 6 6.0168 -4.0082 -0.0004 13 6 7.5463 -3.9674 0.0003 14 1 7.8951 -3.3702 -0.8421 15 6 8.0963 -5.3918 -0.1177 16 8 9.5220 -5.3553 -0.0040 17 6 9.9843 -4.7735 1.2186 18 6 9.4344 -3.3491 1.3366 19 8 8.0086 -3.3855 1.2229 20 1 -0.4849 0.8402 0.0004 21 1 3.8751 -0.6798 0.8895 22 1 3.8745 -0.6809 -0.8904 23 1 3.6584 -3.1503 0.8903 24 1 3.6578 -3.1507 -0.8897 25 1 5.8521 -2.1107 -0.7813 26 1 5.6673 -4.5318 0.8895 27 1 5.6673 -4.5312 -0.8905 28 1 7.6829 -6.0091 0.6799 29 1 7.8186 -5.8105 -1.0849 30 1 11.0740 -4.7444 1.2190 31 1 9.6355 -5.3697 2.0617 32 1 9.8477 -2.7317 0.5390 33 1 9.7121 -2.9292 2.3034 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038061934.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:27 Heat of formation + Delta-G solvation = -121.380078 kcal Electronic energy + Delta-G solvation = -14413.439579 eV Core-core repulsion = 11858.999983 eV Total energy + Delta-G solvation = -2554.439596 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.89002 -37.79202 -36.80235 -35.09309 -33.34186 -31.34817 -29.27744 -26.97324 -25.19579 -23.48354 -22.49487 -21.79386 -18.96606 -18.00971 -17.63353 -17.00894 -16.58745 -16.28222 -16.19416 -15.92870 -15.12701 -14.81371 -14.46262 -14.33685 -13.86898 -13.35476 -13.18722 -12.89525 -12.72295 -12.31202 -11.92365 -11.80963 -11.74319 -11.62663 -11.43432 -11.19464 -10.77107 -10.10068 -9.30200 -8.30422 -6.34989 1.36205 1.39234 1.52586 2.36878 2.71148 2.75431 3.05243 3.16461 3.75807 3.93396 4.00872 4.11788 4.17957 4.35982 4.39547 4.46995 4.56105 4.60389 4.63389 4.77639 4.90134 4.95018 4.95637 5.27743 5.47329 5.63133 5.97077 6.08233 6.19391 6.25959 6.52393 6.73492 7.30148 8.86259 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.062909 B = 0.005151 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.978020 B = 5434.821101 C = 5739.746043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.954 3.046 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.251 1.251 7 C -0.535 4.535 8 H 0.033 0.967 9 C -0.005 4.005 10 C 0.087 3.913 11 N -0.692 5.692 12 C 0.067 3.933 13 C 0.062 3.938 14 H 0.067 0.933 15 C 0.034 3.966 16 O -0.396 6.396 17 C 0.022 3.978 18 C 0.017 3.983 19 O -0.386 6.386 20 H 0.267 0.733 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.054 0.946 24 H 0.023 0.977 25 H 0.341 0.659 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.578 -8.761 0.147 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.175 1.175 7 C -0.573 4.573 8 H 0.051 0.949 9 C -0.043 4.043 10 C -0.041 4.041 11 N -0.324 5.324 12 C -0.062 4.062 13 C 0.004 3.996 14 H 0.084 0.916 15 C -0.044 4.044 16 O -0.315 6.315 17 C -0.055 4.055 18 C -0.060 4.060 19 O -0.306 6.306 20 H 0.076 0.924 21 H 0.038 0.962 22 H 0.037 0.963 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.159 0.841 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 21.479 -8.600 0.837 23.152 hybrid contribution -0.550 0.471 -0.809 1.086 sum 20.929 -8.129 0.027 22.453 Atomic orbital electron populations 1.70069 1.08270 1.28244 1.52526 1.25990 0.95617 1.03523 0.93941 0.85603 0.79341 0.78096 0.79262 1.18896 1.20879 1.17452 1.21413 0.91890 0.93290 1.50724 0.94852 1.19435 0.93586 0.94543 0.96695 1.21634 0.86023 0.97411 0.99077 1.60392 1.07564 1.14115 1.50320 1.21926 0.92003 0.90403 1.01881 1.22773 0.94343 0.94681 0.87818 0.91558 1.23272 0.81101 0.95427 1.04577 1.88053 1.21339 1.81986 1.40091 1.23420 1.01671 0.93441 0.86941 1.23428 0.81166 0.97223 1.04154 1.88226 1.21538 1.82083 1.38732 0.92401 0.96231 0.96251 0.92740 0.95913 0.84062 0.90891 0.91912 0.91610 0.86009 0.85566 0.91844 0.92253 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.43 13.96 21.45 0.30 -60.14 16 2 C 0.01 0.37 5.47 84.65 0.46 0.83 16 3 Si 0.95 45.35 27.47 68.60 1.88 47.23 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 7 C -0.53 -31.59 9.66 25.60 0.25 -31.34 16 8 H 0.03 2.15 7.99 -2.91 -0.02 2.12 16 9 C 0.00 -0.23 4.30 29.85 0.13 -0.10 16 10 C 0.09 3.55 5.62 86.31 0.49 4.04 16 11 N -0.69 -23.21 6.45 -513.87 -3.32 -26.53 16 12 C 0.07 1.76 5.36 86.30 0.46 2.23 16 13 C 0.06 1.44 3.02 30.64 0.09 1.54 16 14 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 15 C 0.03 0.64 6.34 72.03 0.46 1.09 16 16 O -0.40 -8.15 10.85 -136.00 -1.48 -9.62 16 17 C 0.02 0.35 7.05 72.03 0.51 0.86 16 18 C 0.02 0.32 7.05 72.03 0.51 0.82 16 19 O -0.39 -10.33 10.44 -136.00 -1.42 -11.75 16 20 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 21 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 22 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 23 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 24 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.34 10.55 8.73 -89.70 -0.78 9.77 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.13 1.36 8.14 -2.39 -0.02 1.35 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -69.86 273.15 -0.44 -70.29 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.24 Total: 10.55 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 3.35 Total: -20.04 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -3.02 Total: -86.66 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -2.90 Total: -21.37 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Total: -69.86 -0.44 -70.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038061934.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.086 kcal (2) G-P(sol) polarization free energy of solvation -69.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds