Wall clock time and date at job start Mon Mar 30 2020 02:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47430 * 2 1 4 4 C 1.50703 * 109.47110 * 240.00228 * 2 1 3 5 5 H 1.07995 * 120.00435 * 244.43087 * 4 2 1 6 6 C 1.37880 * 119.99664 * 64.42558 * 4 2 1 7 7 N 1.31517 * 120.00125 * 198.38724 * 6 4 2 8 8 Si 1.86799 * 119.99994 * 18.39367 * 6 4 2 9 9 H 1.48500 * 109.47153 * 95.41744 * 8 6 4 10 10 H 1.48504 * 109.47104 * 215.41415 * 8 6 4 11 11 H 1.48496 * 109.47317 * 335.41715 * 8 6 4 12 12 N 1.46902 * 109.47499 * 120.00705 * 2 1 3 13 13 C 1.46899 * 111.00006 * 178.44041 * 12 2 1 14 14 C 1.46898 * 110.99540 * 302.39255 * 12 2 1 15 15 H 1.09005 * 108.85131 * 54.34213 * 14 12 2 16 16 C 1.52947 * 108.88941 * 295.90316 * 14 12 2 17 17 C 1.55147 * 108.95872 * 209.10691 * 16 14 12 18 18 S 1.83984 * 100.91298 * 41.43784 * 17 16 14 19 19 C 1.53709 * 108.88747 * 172.91975 * 14 12 2 20 20 H 1.09000 * 109.46938 * 300.85030 * 1 2 3 21 21 H 1.08996 * 109.46986 * 60.84856 * 1 2 3 22 22 H 1.09003 * 109.46929 * 180.85420 * 1 2 3 23 23 H 0.96999 * 119.99795 * 179.97438 * 7 6 4 24 24 H 1.09003 * 109.46503 * 176.78220 * 13 12 2 25 25 H 1.08997 * 109.46988 * 56.78612 * 13 12 2 26 26 H 1.08995 * 109.46961 * 296.77550 * 13 12 2 27 27 H 1.08996 * 109.59986 * 329.04038 * 16 14 12 28 28 H 1.09005 * 109.60132 * 89.17851 * 16 14 12 29 29 H 1.09001 * 111.13607 * 283.52008 * 17 16 14 30 30 H 1.09004 * 111.16892 * 159.36400 * 17 16 14 31 31 H 1.08995 * 110.34279 * 242.48957 * 19 14 12 32 32 H 1.08994 * 110.34129 * 4.75128 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5930 -1.6283 -1.1332 6 6 1.7762 -0.1884 -2.4807 7 7 1.8804 -0.9522 -3.5462 8 14 1.2812 1.6038 -2.6610 9 1 2.4832 2.4211 -2.9653 10 1 0.2990 1.7372 -3.7669 11 1 0.6680 2.0779 -1.3944 12 7 2.0198 -0.6926 1.1993 13 6 3.4878 -0.7446 1.2147 14 6 1.5026 -0.0605 2.4203 15 1 0.4153 -0.0127 2.3588 16 6 2.0534 1.3634 2.5121 17 6 2.1641 1.7657 4.0064 18 16 2.8204 0.2104 4.7381 19 6 1.8951 -0.9220 3.6313 20 1 -0.3633 0.5270 0.8823 21 1 -0.3633 0.5006 -0.8975 22 1 -0.3633 -1.0276 0.0153 23 1 1.6997 -0.5850 -4.4257 24 1 3.8251 -1.2115 2.1401 25 1 3.8878 0.2673 1.1515 26 1 3.8396 -1.3283 0.3640 27 1 3.0388 1.4049 2.0481 28 1 1.3807 2.0496 1.9975 29 1 1.1865 2.0128 4.4204 30 1 2.8649 2.5897 4.1414 31 1 1.0039 -1.2981 4.1335 32 1 2.5318 -1.7490 3.3174 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246756.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:46 Heat of formation + Delta-G solvation = 14.078599 kcal Electronic energy + Delta-G solvation = -13332.177784 eV Core-core repulsion = 11226.364988 eV Total energy + Delta-G solvation = -2105.812796 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.58242 -33.97473 -32.04851 -30.25889 -28.81915 -25.92904 -24.51026 -23.50415 -20.89868 -18.52674 -16.90742 -16.54593 -15.87607 -14.94678 -14.18486 -13.95709 -13.82913 -13.11398 -12.84588 -12.38186 -12.20763 -11.86129 -11.67274 -11.50618 -11.30077 -10.96033 -10.58062 -10.49242 -10.46579 -10.28537 -9.70927 -9.60643 -9.17455 -8.48482 -7.60604 -7.40383 -6.15065 -4.07044 2.00104 2.44861 3.22047 3.32018 3.33894 4.36824 4.66179 4.75754 4.95900 5.16367 5.24952 5.28466 5.33467 5.63846 5.75346 5.90837 6.04312 6.10615 6.16185 6.31278 6.47502 6.53555 6.62861 6.82366 6.89937 7.23419 7.62158 7.87824 7.99237 8.59581 8.97602 9.51422 10.97745 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.050475 B = 0.009129 C = 0.008588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.592502 B = 3066.571874 C = 3259.623013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.185 3.815 3 H -0.003 1.003 4 C -0.513 4.513 5 H 0.081 0.919 6 C 0.077 3.923 7 N -0.887 5.887 8 Si 0.860 3.140 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.259 1.259 12 N -0.517 5.517 13 C 0.031 3.969 14 C 0.069 3.931 15 H 0.090 0.910 16 C -0.163 4.163 17 C -0.060 4.060 18 S -0.319 6.319 19 C -0.053 4.053 20 H 0.022 0.978 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.263 0.737 24 H 0.052 0.948 25 H 0.019 0.981 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.892 4.651 12.367 13.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.078 3.922 3 H 0.015 0.985 4 C -0.551 4.551 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.524 5.524 8 Si 0.687 3.313 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.183 1.183 12 N -0.240 5.240 13 C -0.117 4.117 14 C -0.042 4.042 15 H 0.108 0.892 16 C -0.203 4.203 17 C -0.209 4.209 18 S -0.094 6.094 19 C -0.201 4.201 20 H 0.041 0.959 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.316 3.919 13.030 13.610 hybrid contribution -0.783 2.076 -1.213 2.528 sum -1.099 5.995 11.817 13.296 Atomic orbital electron populations 1.22182 0.98212 1.00973 0.98383 1.19658 0.91791 0.92296 0.88437 0.98541 1.20869 1.35929 1.10324 0.87972 0.90137 1.24859 0.94703 0.97146 0.95856 1.69999 1.48776 1.34924 0.98738 0.87192 0.78609 0.87216 0.78252 1.20777 1.21226 1.18326 1.62373 1.08873 1.52063 1.00678 1.22318 0.88050 0.99694 1.01618 1.22284 1.01088 0.89568 0.91248 0.89170 1.23173 1.04084 0.98492 0.94558 1.24224 1.03270 0.96198 0.97185 1.87639 1.64227 1.05825 1.51720 1.24100 1.01646 0.99378 0.94958 0.95935 0.93443 0.92417 0.92659 0.92937 0.96246 0.90157 0.89535 0.90333 0.89507 0.88241 0.89412 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.25 37.16 0.31 -2.66 16 2 C 0.19 4.20 1.31 -68.86 -0.09 4.11 16 3 H 0.00 -0.07 5.68 -51.93 -0.30 -0.36 16 4 C -0.51 -13.90 8.28 -34.44 -0.29 -14.19 16 5 H 0.08 2.39 6.99 -52.49 -0.37 2.02 16 6 C 0.08 2.16 5.31 -17.82 -0.09 2.06 16 7 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 8 Si 0.86 20.72 25.86 -169.99 -4.40 16.32 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.26 -5.87 5.62 56.52 0.32 -5.55 16 12 N -0.52 -10.17 4.53 -227.88 -1.03 -11.20 16 13 C 0.03 0.59 8.47 60.06 0.51 1.09 16 14 C 0.07 1.11 2.41 -67.37 -0.16 0.95 16 15 H 0.09 1.45 5.92 -51.93 -0.31 1.14 16 16 C -0.16 -2.43 4.56 -25.62 -0.12 -2.55 16 17 C -0.06 -0.75 7.52 38.29 0.29 -0.46 16 18 S -0.32 -4.54 23.23 -107.50 -2.50 -7.04 16 19 C -0.05 -0.76 6.49 37.53 0.24 -0.51 16 20 H 0.02 0.40 6.29 -51.93 -0.33 0.08 16 21 H 0.05 1.04 5.23 -51.93 -0.27 0.77 16 22 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.05 0.87 6.18 -51.93 -0.32 0.55 16 25 H 0.02 0.36 6.14 -51.93 -0.32 0.04 16 26 H 0.08 1.67 6.57 -51.93 -0.34 1.33 16 27 H 0.09 1.42 5.54 -51.93 -0.29 1.13 16 28 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.11 1.65 6.35 -51.93 -0.33 1.33 16 LS Contribution 249.83 15.07 3.76 3.76 Total: -1.00 -28.55 249.83 -7.28 -35.83 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.49 Total: 0.15 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 0.60 Total: -12.15 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.26 Total: -36.88 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.40 Total: 16.32 kcal Atomic # 16 Polarization: -4.54 SS G_CDS: -2.50 Total: -7.04 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.55 -7.28 -35.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246756.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.913 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds