Wall clock time and date at job start Mon Mar 30 2020 02:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47430 * 2 1 4 4 C 1.50703 * 109.47110 * 240.00228 * 2 1 3 5 5 H 1.07995 * 120.00435 * 244.43087 * 4 2 1 6 6 C 1.37880 * 119.99664 * 64.42558 * 4 2 1 7 7 N 1.31517 * 120.00125 * 198.38724 * 6 4 2 8 8 Si 1.86799 * 119.99994 * 18.39367 * 6 4 2 9 9 H 1.48500 * 109.47153 * 95.41744 * 8 6 4 10 10 H 1.48504 * 109.47104 * 215.41415 * 8 6 4 11 11 H 1.48496 * 109.47317 * 335.41715 * 8 6 4 12 12 N 1.46902 * 109.47499 * 120.00705 * 2 1 3 13 13 C 1.46899 * 111.00006 * 178.44041 * 12 2 1 14 14 C 1.46898 * 110.99540 * 302.39255 * 12 2 1 15 15 H 1.09005 * 108.85131 * 54.34213 * 14 12 2 16 16 C 1.52947 * 108.88941 * 295.90316 * 14 12 2 17 17 C 1.55147 * 108.95872 * 209.10691 * 16 14 12 18 18 S 1.83984 * 100.91298 * 41.43784 * 17 16 14 19 19 C 1.53709 * 108.88747 * 172.91975 * 14 12 2 20 20 H 1.09000 * 109.46938 * 300.85030 * 1 2 3 21 21 H 1.08996 * 109.46986 * 60.84856 * 1 2 3 22 22 H 1.09003 * 109.46929 * 180.85420 * 1 2 3 23 23 H 0.96999 * 119.99795 * 179.97438 * 7 6 4 24 24 H 1.09003 * 109.46503 * 176.78220 * 13 12 2 25 25 H 1.08997 * 109.46988 * 56.78612 * 13 12 2 26 26 H 1.08995 * 109.46961 * 296.77550 * 13 12 2 27 27 H 1.08996 * 109.59986 * 329.04038 * 16 14 12 28 28 H 1.09005 * 109.60132 * 89.17851 * 16 14 12 29 29 H 1.09001 * 111.13607 * 283.52008 * 17 16 14 30 30 H 1.09004 * 111.16892 * 159.36400 * 17 16 14 31 31 H 1.08995 * 110.34279 * 242.48957 * 19 14 12 32 32 H 1.08994 * 110.34129 * 4.75128 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5930 -1.6283 -1.1332 6 6 1.7762 -0.1884 -2.4807 7 7 1.8804 -0.9522 -3.5462 8 14 1.2812 1.6038 -2.6610 9 1 2.4832 2.4211 -2.9653 10 1 0.2990 1.7372 -3.7669 11 1 0.6680 2.0779 -1.3944 12 7 2.0198 -0.6926 1.1993 13 6 3.4878 -0.7446 1.2147 14 6 1.5026 -0.0605 2.4203 15 1 0.4153 -0.0127 2.3588 16 6 2.0534 1.3634 2.5121 17 6 2.1641 1.7657 4.0064 18 16 2.8204 0.2104 4.7381 19 6 1.8951 -0.9220 3.6313 20 1 -0.3633 0.5270 0.8823 21 1 -0.3633 0.5006 -0.8975 22 1 -0.3633 -1.0276 0.0153 23 1 1.6997 -0.5850 -4.4257 24 1 3.8251 -1.2115 2.1401 25 1 3.8878 0.2673 1.1515 26 1 3.8396 -1.3283 0.3640 27 1 3.0388 1.4049 2.0481 28 1 1.3807 2.0496 1.9975 29 1 1.1865 2.0128 4.4204 30 1 2.8649 2.5897 4.1414 31 1 1.0039 -1.2981 4.1335 32 1 2.5318 -1.7490 3.3174 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246756.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:46 Heat of formation + Delta-G solvation = -4.988399 kcal Electronic energy + Delta-G solvation = -13333.004591 eV Core-core repulsion = 11226.364988 eV Total energy + Delta-G solvation = -2106.639603 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.04432 -35.64943 -33.82481 -31.86702 -30.09202 -27.65355 -26.18607 -24.77928 -22.53604 -19.99392 -18.87393 -17.68677 -17.39284 -16.60000 -15.59534 -15.47906 -15.26245 -14.67459 -14.48336 -14.00528 -13.61487 -13.30065 -12.98356 -12.88896 -12.74207 -12.68024 -12.30500 -12.08997 -12.05191 -11.78026 -11.46547 -11.07885 -10.83893 -10.59075 -8.97637 -8.69357 -8.29877 -6.25840 0.93559 1.31880 1.36574 1.37569 1.45087 2.34541 3.02275 3.24776 3.59969 3.80957 4.11261 4.12049 4.22265 4.50330 4.58431 4.61634 4.64442 4.72729 4.75269 4.79737 4.90892 4.94331 5.15448 5.21316 5.30300 5.47071 5.75941 6.03889 6.33422 6.70601 6.79361 7.36437 8.86941 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.050475 B = 0.009129 C = 0.008588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.592502 B = 3066.571874 C = 3259.623013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.190 3.810 3 H -0.002 1.002 4 C -0.514 4.514 5 H 0.037 0.963 6 C 0.020 3.980 7 N -0.939 5.939 8 Si 0.925 3.075 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.230 1.230 12 N -0.530 5.530 13 C 0.040 3.960 14 C 0.069 3.931 15 H 0.097 0.903 16 C -0.162 4.162 17 C -0.046 4.046 18 S -0.338 6.338 19 C -0.047 4.047 20 H 0.059 0.941 21 H 0.039 0.961 22 H 0.046 0.954 23 H 0.265 0.735 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 6.734 14.383 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.083 3.917 3 H 0.016 0.984 4 C -0.552 4.552 5 H 0.055 0.945 6 C -0.178 4.178 7 N -0.579 5.579 8 Si 0.749 3.251 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.153 1.153 12 N -0.254 5.254 13 C -0.108 4.108 14 C -0.041 4.041 15 H 0.115 0.885 16 C -0.202 4.202 17 C -0.194 4.194 18 S -0.113 6.113 19 C -0.195 4.195 20 H 0.078 0.922 21 H 0.057 0.943 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.039 0.961 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.124 0.876 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.386 6.006 15.085 16.295 hybrid contribution -0.395 1.332 -1.788 2.264 sum -1.781 7.338 13.297 15.291 Atomic orbital electron populations 1.22081 0.96697 1.00876 0.99727 1.19476 0.92780 0.91689 0.87805 0.98420 1.21133 1.34849 1.09016 0.90241 0.94523 1.25700 0.95122 1.01605 0.95417 1.70139 1.51154 1.37181 0.99423 0.86157 0.78351 0.81286 0.79345 1.20671 1.21180 1.15285 1.62247 1.09128 1.52734 1.01266 1.22185 0.87948 0.99399 1.01258 1.22392 1.01281 0.90498 0.89922 0.88531 1.23097 1.03107 0.97630 0.96362 1.24279 1.04813 0.95394 0.94892 1.87778 1.64735 1.07166 1.51671 1.24016 1.02254 0.98825 0.94396 0.92225 0.94256 0.93453 0.92629 0.90852 0.96057 0.93360 0.91155 0.89795 0.87311 0.86605 0.87571 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 8.25 71.98 0.59 -4.85 16 2 C 0.19 8.40 1.31 44.17 0.06 8.46 16 3 H 0.00 -0.07 5.68 -2.39 -0.01 -0.09 16 4 C -0.51 -28.48 8.28 25.60 0.21 -28.27 16 5 H 0.04 2.30 6.99 -2.91 -0.02 2.27 16 6 C 0.02 1.12 5.31 84.65 0.45 1.57 16 7 N -0.94 -57.78 13.96 21.45 0.30 -57.48 16 8 Si 0.92 42.34 25.86 68.60 1.77 44.12 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.23 -9.38 5.62 99.48 0.56 -8.83 16 12 N -0.53 -20.33 4.53 -874.89 -3.96 -24.29 16 13 C 0.04 1.51 8.47 127.69 1.08 2.59 16 14 C 0.07 2.03 2.41 45.14 0.11 2.14 16 15 H 0.10 2.73 5.92 -2.38 -0.01 2.72 16 16 C -0.16 -4.28 4.56 31.31 0.14 -4.14 16 17 C -0.05 -0.95 7.52 72.72 0.55 -0.41 16 18 S -0.34 -8.65 23.23 -56.49 -1.31 -9.96 16 19 C -0.05 -1.22 6.49 72.22 0.47 -0.75 16 20 H 0.06 1.93 6.29 -2.39 -0.02 1.91 16 21 H 0.04 1.62 5.23 -2.39 -0.01 1.60 16 22 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 24 H 0.07 2.40 6.18 -2.39 -0.01 2.39 16 25 H 0.02 0.78 6.14 -2.39 -0.01 0.77 16 26 H 0.05 2.09 6.57 -2.39 -0.02 2.08 16 27 H 0.07 2.12 5.54 -2.39 -0.01 2.11 16 28 H 0.08 2.16 8.04 -2.38 -0.02 2.14 16 29 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.10 2.83 6.35 -2.39 -0.02 2.82 16 Total: -1.00 -62.40 249.83 1.42 -60.98 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.96 Total: 10.29 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 3.66 Total: -23.66 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -3.66 Total: -81.77 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.77 Total: 44.12 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.31 Total: -9.96 kcal Total: -62.40 1.42 -60.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246756.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.989 kcal (2) G-P(sol) polarization free energy of solvation -62.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds