Wall clock time and date at job start Mon Mar 30 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47264 * 2 1 4 4 C 1.53001 * 109.47353 * 120.00359 * 2 1 3 5 5 N 1.46901 * 109.46915 * 179.97438 * 4 2 1 6 6 S 1.81403 * 109.46659 * 240.00129 * 2 1 3 7 7 C 1.81399 * 103.00290 * 65.00084 * 6 2 1 8 8 C 1.52995 * 109.47342 * 179.97438 * 7 6 2 9 9 C 1.50706 * 115.56309 * 319.87784 * 8 7 6 10 10 H 1.07997 * 119.99688 * 96.14451 * 9 8 7 11 11 C 1.37872 * 119.99994 * 276.14536 * 9 8 7 12 12 N 1.31513 * 120.00198 * 8.06732 * 11 9 8 13 13 Si 1.86802 * 120.00048 * 188.06400 * 11 9 8 14 14 H 1.48504 * 109.46998 * 59.99927 * 13 11 9 15 15 H 1.48499 * 109.47138 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47020 * 300.00297 * 13 11 9 17 17 C 1.52993 * 117.50135 * 174.18748 * 8 7 6 18 18 C 1.52996 * 60.03638 * 252.49848 * 17 8 7 19 19 H 1.09002 * 109.47264 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46887 * 300.00134 * 1 2 3 21 21 H 1.09005 * 109.46994 * 59.99960 * 1 2 3 22 22 H 1.09001 * 109.46722 * 299.99609 * 4 2 1 23 23 H 1.08996 * 109.47054 * 59.99198 * 4 2 1 24 24 H 1.00904 * 110.99536 * 179.97438 * 5 4 2 25 25 H 1.00901 * 111.00215 * 303.94706 * 5 4 2 26 26 H 1.08999 * 109.46922 * 60.00002 * 7 6 2 27 27 H 1.08993 * 109.47111 * 299.99997 * 7 6 2 28 28 H 0.96995 * 120.00535 * 174.97977 * 12 11 9 29 29 H 1.08998 * 117.49808 * 0.02562 * 17 8 7 30 30 H 1.08999 * 117.50067 * 145.00024 * 17 8 7 31 31 H 1.09000 * 117.50117 * 107.49264 * 18 17 8 32 32 H 1.09001 * 117.50252 * 252.52203 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5090 -0.7218 1.2488 6 16 2.1345 -0.8551 -1.4812 7 6 1.5663 0.2153 -2.8310 8 6 2.0048 -0.3778 -4.1714 9 6 3.3904 -0.9699 -4.1984 10 1 3.5269 -2.0313 -4.0531 11 6 4.4836 -0.1566 -4.4086 12 7 4.3371 1.1503 -4.4271 13 14 6.1730 -0.9107 -4.6669 14 1 6.1448 -1.7902 -5.8632 15 1 7.1716 0.1695 -4.8694 16 1 6.5455 -1.7112 -3.4728 17 6 1.5044 0.3073 -5.4446 18 6 0.9321 -1.0502 -5.0319 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.6767 -0.2075 2.1392 23 1 1.6766 -1.7489 1.2492 24 1 3.8706 -1.1925 2.0648 25 1 3.8703 -1.1357 0.4025 26 1 2.0001 1.2084 -2.7142 27 1 0.4791 0.2882 -2.8038 28 1 5.1152 1.7245 -4.5020 29 1 0.8632 1.1809 -5.3273 30 1 2.1775 0.3302 -6.3016 31 1 -0.0860 -1.0700 -4.6430 32 1 1.2290 -1.9206 -5.6171 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085307485.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:53 Heat of formation + Delta-G solvation = 9.579945 kcal Electronic energy + Delta-G solvation = -12722.642389 eV Core-core repulsion = 10616.634517 eV Total energy + Delta-G solvation = -2106.007872 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -36.53792 -35.65154 -31.89871 -31.35377 -27.53795 -25.27407 -24.64785 -21.29528 -21.09780 -19.11432 -16.21983 -15.95609 -15.28246 -14.73874 -14.53647 -13.84390 -13.57186 -12.96422 -12.88094 -12.55760 -12.02772 -11.76751 -11.54502 -11.14236 -10.91027 -10.82492 -10.61595 -10.46304 -10.13871 -9.61933 -8.99670 -8.74180 -8.41120 -8.39400 -7.98196 -6.57556 -5.98218 -4.01852 2.57781 3.36605 3.40610 3.43715 3.66903 4.46667 4.77583 5.20141 5.31051 5.33530 5.46722 5.51175 5.75101 5.82862 5.96919 6.02913 6.15392 6.26542 6.38751 6.48341 6.53241 6.73540 6.87104 7.06497 7.39238 7.40259 7.48470 7.75733 7.94077 8.43261 8.95956 9.62112 11.10549 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.026541 B = 0.011511 C = 0.008827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.702385 B = 2431.898738 C = 3171.151786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 H 0.084 0.916 4 C 0.090 3.910 5 N -0.851 5.851 6 S -0.214 6.214 7 C -0.026 4.026 8 C 0.059 3.941 9 C -0.485 4.485 10 H 0.061 0.939 11 C 0.079 3.921 12 N -0.877 5.877 13 Si 0.888 3.112 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.274 1.274 17 C -0.155 4.155 18 C -0.208 4.208 19 H 0.061 0.939 20 H 0.052 0.948 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.028 0.972 24 H 0.333 0.667 25 H 0.357 0.643 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.260 0.740 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.397 -2.144 7.446 9.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.218 4.218 3 H 0.103 0.897 4 C -0.042 4.042 5 N -0.383 5.383 6 S 0.015 5.985 7 C -0.174 4.174 8 C 0.057 3.943 9 C -0.524 4.524 10 H 0.079 0.921 11 C -0.124 4.124 12 N -0.514 5.514 13 Si 0.716 3.284 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.195 4.195 18 C -0.246 4.246 19 H 0.080 0.920 20 H 0.071 0.929 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.047 0.953 24 H 0.145 0.855 25 H 0.174 0.826 26 H 0.095 0.905 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.779 -2.114 7.357 9.024 hybrid contribution 0.121 -0.014 -0.152 0.194 sum -4.659 -2.127 7.205 8.840 Atomic orbital electron populations 1.22031 0.94323 1.02330 1.01486 1.23268 0.97540 1.03262 0.97766 0.89727 1.21436 0.88802 0.97861 0.96063 1.58754 1.06966 1.64301 1.08315 1.86763 1.75900 1.37499 0.98387 1.22965 0.98286 1.00128 0.96069 1.18479 0.93003 0.97315 0.85500 1.20211 0.88554 0.93904 1.49746 0.92068 1.24891 0.98646 0.94693 0.94213 1.69948 1.29942 1.02669 1.48803 0.86711 0.83971 0.78864 0.78838 1.20393 1.21398 1.19963 1.22584 1.02427 0.92860 1.01614 1.23067 0.97282 0.96654 1.07553 0.91950 0.92907 0.92456 0.91119 0.95331 0.85547 0.82645 0.90489 0.93700 0.92986 0.91950 0.89917 0.91695 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.10 37.16 0.34 -1.67 16 2 C -0.09 -1.48 3.08 -26.73 -0.08 -1.57 16 3 H 0.08 1.53 8.14 -51.92 -0.42 1.10 16 4 C 0.09 1.31 6.30 -3.82 -0.02 1.28 16 5 N -0.85 -12.95 9.61 -10.37 -0.10 -13.05 16 6 S -0.21 -4.45 18.64 -107.50 -2.00 -6.45 16 7 C -0.03 -0.58 5.75 37.16 0.21 -0.37 16 8 C 0.06 1.43 1.62 -155.62 -0.25 1.18 16 9 C -0.49 -13.10 7.54 -34.44 -0.26 -13.36 16 10 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 11 C 0.08 2.17 5.39 -17.82 -0.10 2.07 16 12 N -0.88 -24.74 13.03 55.43 0.72 -24.02 16 13 Si 0.89 21.37 29.55 -169.99 -5.02 16.35 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.16 -3.62 9.58 -26.74 -0.26 -3.88 16 18 C -0.21 -4.56 9.89 -26.69 -0.26 -4.82 16 19 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.06 0.84 6.92 -51.93 -0.36 0.48 16 22 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.33 4.09 9.08 -39.29 -0.36 3.73 16 25 H 0.36 6.11 7.60 -39.29 -0.30 5.81 16 26 H 0.08 1.89 8.14 -51.92 -0.42 1.47 16 27 H 0.04 0.91 6.95 -51.93 -0.36 0.55 16 28 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 31 H 0.06 1.28 8.09 -51.93 -0.42 0.86 16 32 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 278.46 15.07 4.20 4.20 Total: -1.00 -27.99 278.46 -8.04 -36.02 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -5.15 Total: 8.09 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -0.68 Total: -21.13 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.62 Total: -37.07 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -4.45 SS G_CDS: -2.00 Total: -6.45 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.99 -8.04 -36.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085307485.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.604 kcal (2) G-P(sol) polarization free energy of solvation -27.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds