Wall clock time and date at job start Mon Mar 30 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47264 * 2 1 4 4 C 1.53001 * 109.47353 * 120.00359 * 2 1 3 5 5 N 1.46901 * 109.46915 * 179.97438 * 4 2 1 6 6 S 1.81403 * 109.46659 * 240.00129 * 2 1 3 7 7 C 1.81399 * 103.00290 * 65.00084 * 6 2 1 8 8 C 1.52995 * 109.47342 * 179.97438 * 7 6 2 9 9 C 1.50706 * 115.56309 * 319.87784 * 8 7 6 10 10 H 1.07997 * 119.99688 * 96.14451 * 9 8 7 11 11 C 1.37872 * 119.99994 * 276.14536 * 9 8 7 12 12 N 1.31513 * 120.00198 * 8.06732 * 11 9 8 13 13 Si 1.86802 * 120.00048 * 188.06400 * 11 9 8 14 14 H 1.48504 * 109.46998 * 59.99927 * 13 11 9 15 15 H 1.48499 * 109.47138 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47020 * 300.00297 * 13 11 9 17 17 C 1.52993 * 117.50135 * 174.18748 * 8 7 6 18 18 C 1.52996 * 60.03638 * 252.49848 * 17 8 7 19 19 H 1.09002 * 109.47264 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46887 * 300.00134 * 1 2 3 21 21 H 1.09005 * 109.46994 * 59.99960 * 1 2 3 22 22 H 1.09001 * 109.46722 * 299.99609 * 4 2 1 23 23 H 1.08996 * 109.47054 * 59.99198 * 4 2 1 24 24 H 1.00904 * 110.99536 * 179.97438 * 5 4 2 25 25 H 1.00901 * 111.00215 * 303.94706 * 5 4 2 26 26 H 1.08999 * 109.46922 * 60.00002 * 7 6 2 27 27 H 1.08993 * 109.47111 * 299.99997 * 7 6 2 28 28 H 0.96995 * 120.00535 * 174.97977 * 12 11 9 29 29 H 1.08998 * 117.49808 * 0.02562 * 17 8 7 30 30 H 1.08999 * 117.50067 * 145.00024 * 17 8 7 31 31 H 1.09000 * 117.50117 * 107.49264 * 18 17 8 32 32 H 1.09001 * 117.50252 * 252.52203 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5090 -0.7218 1.2488 6 16 2.1345 -0.8551 -1.4812 7 6 1.5663 0.2153 -2.8310 8 6 2.0048 -0.3778 -4.1714 9 6 3.3904 -0.9699 -4.1984 10 1 3.5269 -2.0313 -4.0531 11 6 4.4836 -0.1566 -4.4086 12 7 4.3371 1.1503 -4.4271 13 14 6.1730 -0.9107 -4.6669 14 1 6.1448 -1.7902 -5.8632 15 1 7.1716 0.1695 -4.8694 16 1 6.5455 -1.7112 -3.4728 17 6 1.5044 0.3073 -5.4446 18 6 0.9321 -1.0502 -5.0319 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.6767 -0.2075 2.1392 23 1 1.6766 -1.7489 1.2492 24 1 3.8706 -1.1925 2.0648 25 1 3.8703 -1.1357 0.4025 26 1 2.0001 1.2084 -2.7142 27 1 0.4791 0.2882 -2.8038 28 1 5.1152 1.7245 -4.5020 29 1 0.8632 1.1809 -5.3273 30 1 2.1775 0.3302 -6.3016 31 1 -0.0860 -1.0700 -4.6430 32 1 1.2290 -1.9206 -5.6171 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085307485.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:53 Heat of formation + Delta-G solvation = -7.400262 kcal Electronic energy + Delta-G solvation = -12723.378706 eV Core-core repulsion = 10616.634517 eV Total energy + Delta-G solvation = -2106.744189 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.39571 -36.86277 -33.95716 -32.56863 -29.32022 -27.32366 -25.81748 -22.94035 -22.55921 -21.00265 -18.13932 -17.25454 -16.75130 -16.54567 -16.03870 -15.55744 -15.23978 -14.55902 -14.23243 -14.14885 -13.59744 -13.14293 -12.97780 -12.93151 -12.78665 -12.44973 -12.35606 -12.02070 -11.94801 -11.48365 -10.75560 -10.47833 -10.39252 -9.85224 -9.56700 -8.22177 -8.05042 -6.13063 1.04683 1.44051 1.44591 1.51220 2.07626 2.47047 3.24083 3.48184 3.61303 3.97733 4.22280 4.27391 4.32866 4.41288 4.63675 4.66886 4.69707 4.75238 4.84828 4.97127 5.01387 5.04548 5.22268 5.24461 5.58528 5.61504 5.81842 6.21967 6.41606 6.62101 6.87045 7.52593 9.02290 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.026541 B = 0.011511 C = 0.008827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.702385 B = 2431.898738 C = 3171.151786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 H 0.067 0.933 4 C 0.092 3.908 5 N -0.862 5.862 6 S -0.251 6.251 7 C -0.014 4.014 8 C 0.028 3.972 9 C -0.490 4.490 10 H 0.048 0.952 11 C 0.037 3.963 12 N -0.904 5.904 13 Si 0.940 3.060 14 H -0.274 1.274 15 H -0.287 1.287 16 H -0.272 1.272 17 C -0.160 4.160 18 C -0.184 4.184 19 H 0.069 0.931 20 H 0.082 0.918 21 H 0.048 0.952 22 H 0.098 0.902 23 H 0.037 0.963 24 H 0.349 0.651 25 H 0.345 0.655 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.258 0.742 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.367 -2.714 8.675 11.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.205 4.205 3 H 0.085 0.915 4 C -0.040 4.040 5 N -0.395 5.395 6 S -0.023 6.023 7 C -0.163 4.163 8 C 0.027 3.973 9 C -0.529 4.529 10 H 0.066 0.934 11 C -0.164 4.164 12 N -0.542 5.542 13 Si 0.766 3.234 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.197 1.197 17 C -0.199 4.199 18 C -0.221 4.221 19 H 0.088 0.912 20 H 0.100 0.900 21 H 0.067 0.933 22 H 0.116 0.884 23 H 0.055 0.945 24 H 0.163 0.837 25 H 0.159 0.841 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.753 -2.697 8.589 10.684 hybrid contribution 0.384 0.154 -0.454 0.614 sum -5.369 -2.543 8.135 10.073 Atomic orbital electron populations 1.21979 0.91995 1.03133 1.02495 1.23346 0.99398 1.01744 0.95989 0.91455 1.21514 0.88350 0.98376 0.95728 1.58764 1.07634 1.64642 1.08466 1.86729 1.77249 1.37914 1.00359 1.22723 0.99158 0.98541 0.95877 1.18624 0.92985 0.98885 0.86826 1.20360 0.90187 0.93265 1.49062 0.93412 1.25484 1.01547 0.95042 0.94345 1.70048 1.30406 1.03513 1.50230 0.85898 0.80609 0.78150 0.78741 1.19980 1.21254 1.19740 1.22508 1.02580 0.94407 1.00409 1.23071 0.97829 0.95566 1.05657 0.91231 0.89966 0.93325 0.88410 0.94513 0.83721 0.84078 0.93533 0.91684 0.93315 0.90641 0.92064 0.88958 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.10 71.98 0.66 -2.81 16 2 C -0.08 -2.38 3.08 30.59 0.09 -2.28 16 3 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.09 2.42 6.30 86.30 0.54 2.97 16 5 N -0.86 -24.88 9.61 -186.72 -1.80 -26.67 16 6 S -0.25 -10.27 18.64 -56.49 -1.05 -11.32 16 7 C -0.01 -0.64 5.75 71.98 0.41 -0.23 16 8 C 0.03 1.37 1.62 -52.90 -0.09 1.28 16 9 C -0.49 -26.67 7.54 25.60 0.19 -26.47 16 10 H 0.05 2.67 7.83 -2.91 -0.02 2.64 16 11 C 0.04 2.02 5.39 84.65 0.46 2.47 16 12 N -0.90 -51.86 13.03 21.45 0.28 -51.58 16 13 Si 0.94 44.21 29.55 68.60 2.03 46.24 16 14 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 15 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 16 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 17 C -0.16 -7.40 9.58 30.59 0.29 -7.11 16 18 C -0.18 -7.79 9.89 30.62 0.30 -7.49 16 19 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 20 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.05 1.31 6.92 -2.38 -0.02 1.30 16 22 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 24 H 0.35 7.90 9.08 -89.69 -0.81 7.08 16 25 H 0.34 11.57 7.60 -89.69 -0.68 10.88 16 26 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.06 2.57 6.95 -2.39 -0.02 2.55 16 28 H 0.26 14.33 8.32 -92.71 -0.77 13.56 16 29 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.09 3.38 8.09 -2.39 -0.02 3.36 16 32 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -59.55 278.46 1.93 -57.62 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.40 Total: 25.38 kcal Atomic # 6 Polarization: -42.53 SS G_CDS: 2.87 Total: -39.66 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -1.52 Total: -78.26 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -10.27 SS G_CDS: -1.05 Total: -11.32 kcal Total: -59.55 1.93 -57.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085307485.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.223 kcal (2) G-P(sol) polarization free energy of solvation -59.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds