Wall clock time and date at job start Mon Mar 30 2020 02:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47373 * 2 1 4 4 N 1.46899 * 109.47005 * 240.00270 * 2 1 3 5 5 C 1.53001 * 109.47097 * 120.00391 * 2 1 3 6 6 S 1.81401 * 109.46992 * 184.99979 * 5 2 1 7 7 C 1.81401 * 102.99896 * 179.97438 * 6 5 2 8 8 C 1.52998 * 109.47147 * 179.97438 * 7 6 5 9 9 C 1.50700 * 115.54888 * 65.32918 * 8 7 6 10 10 H 1.07999 * 120.00066 * 265.64841 * 9 8 7 11 11 C 1.37880 * 120.00040 * 85.65403 * 9 8 7 12 12 N 1.31519 * 119.99752 * 353.68913 * 11 9 8 13 13 Si 1.86795 * 120.00094 * 173.68285 * 11 9 8 14 14 H 1.48508 * 109.46589 * 89.99919 * 13 11 9 15 15 H 1.48500 * 109.47396 * 209.99682 * 13 11 9 16 16 H 1.48500 * 109.47419 * 330.00524 * 13 11 9 17 17 C 1.52997 * 117.49829 * 279.66052 * 8 7 6 18 18 C 1.52997 * 117.49689 * 211.00160 * 8 7 6 19 19 H 1.08999 * 109.46683 * 59.99840 * 1 2 3 20 20 H 1.09000 * 109.47245 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47155 * 299.99953 * 1 2 3 22 22 H 1.00904 * 111.00279 * 60.00227 * 4 2 1 23 23 H 1.00901 * 111.00247 * 183.95457 * 4 2 1 24 24 H 1.08996 * 109.47045 * 304.99670 * 5 2 1 25 25 H 1.08998 * 109.47031 * 64.99692 * 5 2 1 26 26 H 1.09000 * 109.47024 * 300.00158 * 7 6 5 27 27 H 1.08999 * 109.47158 * 59.99792 * 7 6 5 28 28 H 0.96992 * 119.99622 * 175.02119 * 12 11 9 29 29 H 1.09007 * 117.50098 * 0.02562 * 17 8 7 30 30 H 1.08997 * 117.50218 * 145.02272 * 17 8 7 31 31 H 1.08998 * 117.49669 * 214.97665 * 18 8 7 32 32 H 1.08995 * 117.50139 * 359.97353 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0400 -0.7213 1.2492 6 16 3.8479 -0.5933 1.3256 7 6 4.2566 -1.4918 2.8475 8 6 5.7720 -1.4756 3.0580 9 6 6.3778 -0.1200 3.3161 10 1 6.7852 0.4541 2.4971 11 6 6.4121 0.3871 4.5977 12 7 5.8074 -0.2530 5.5746 13 14 7.3175 1.9832 4.9467 14 1 6.3843 3.1271 4.7852 15 1 7.8394 1.9626 6.3368 16 1 8.4484 2.1291 3.9954 17 6 6.6063 -2.4827 2.2641 18 6 6.3994 -2.6767 3.7683 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.6962 -0.2349 -2.0386 23 1 3.0262 -0.7626 -1.1910 24 1 1.6055 -0.2619 2.1369 25 1 1.7516 -1.7716 1.2055 26 1 3.7665 -1.0127 3.6951 27 1 3.9128 -2.5228 2.7643 28 1 5.8917 0.0640 6.4874 29 1 6.0757 -3.1567 1.5915 30 1 7.5936 -2.1651 1.9288 31 1 7.2507 -2.4865 4.4219 32 1 5.7326 -3.4782 4.0860 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085313423.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:57 Heat of formation + Delta-G solvation = -9.708068 kcal Electronic energy + Delta-G solvation = -12441.722221 eV Core-core repulsion = 10334.877958 eV Total energy + Delta-G solvation = -2106.844263 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.42761 -37.33401 -33.99942 -30.51895 -29.42953 -28.26908 -27.30594 -22.93298 -21.78599 -20.94161 -18.17450 -17.01600 -16.75185 -16.63818 -16.56390 -15.67243 -15.12981 -14.71693 -14.16656 -13.88630 -13.50583 -13.30640 -12.98270 -12.83926 -12.79385 -12.53185 -12.41131 -12.16507 -11.94723 -11.49373 -10.90239 -10.69960 -10.45022 -9.86658 -9.62033 -8.37256 -8.11555 -6.21704 0.91918 1.39892 1.41895 1.51324 1.94846 2.43308 3.17174 3.53289 3.55030 3.86183 4.18926 4.24164 4.27620 4.41517 4.54850 4.60622 4.69148 4.74189 4.94006 4.97763 4.99846 5.02886 5.22408 5.30655 5.58443 5.62017 5.77319 6.20120 6.38544 6.60821 6.82663 7.46238 8.96838 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.033116 B = 0.008288 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.303545 B = 3377.580399 C = 3787.723540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.108 3.892 3 H 0.035 0.965 4 N -0.847 5.847 5 C -0.083 4.083 6 S -0.276 6.276 7 C -0.014 4.014 8 C 0.027 3.973 9 C -0.496 4.496 10 H 0.048 0.952 11 C 0.028 3.972 12 N -0.907 5.907 13 Si 0.944 3.056 14 H -0.279 1.279 15 H -0.282 1.282 16 H -0.271 1.271 17 C -0.181 4.181 18 C -0.153 4.153 19 H 0.072 0.928 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.350 0.650 23 H 0.346 0.654 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.260 0.740 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 -0.474 -8.739 11.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.005 4.005 3 H 0.053 0.947 4 N -0.380 5.380 5 C -0.232 4.232 6 S -0.048 6.048 7 C -0.163 4.163 8 C 0.026 3.974 9 C -0.534 4.534 10 H 0.066 0.934 11 C -0.172 4.172 12 N -0.545 5.545 13 Si 0.770 3.230 14 H -0.204 1.204 15 H -0.207 1.207 16 H -0.196 1.196 17 C -0.219 4.219 18 C -0.192 4.192 19 H 0.091 0.909 20 H 0.082 0.918 21 H 0.085 0.915 22 H 0.164 0.836 23 H 0.160 0.840 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.828 -0.534 -8.990 11.932 hybrid contribution 0.335 1.010 1.386 1.747 sum -7.492 0.476 -7.604 10.686 Atomic orbital electron populations 1.21777 0.91951 1.02871 1.02787 1.21004 0.96533 0.94355 0.88566 0.94699 1.58817 1.17186 1.58015 1.04024 1.23555 0.93899 1.04274 1.01460 1.86550 1.07321 1.76428 1.34464 1.22773 1.00329 0.98468 0.94713 1.18556 0.88076 0.90732 1.00036 1.20574 1.38449 1.01292 0.93065 0.93420 1.25582 0.95570 0.99718 0.96330 1.70100 1.42249 1.42122 1.00023 0.85785 0.79162 0.80720 0.77346 1.20444 1.20723 1.19551 1.22992 1.01395 1.04005 0.93487 1.22511 1.02558 1.00480 0.93683 0.90861 0.91833 0.91518 0.83641 0.84049 0.90427 0.89988 0.92905 0.92143 0.93137 0.89133 0.90427 0.91857 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 9.49 71.98 0.68 -1.92 16 2 C 0.11 2.72 3.43 44.92 0.15 2.87 16 3 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 4 N -0.85 -20.26 9.25 -168.68 -1.56 -21.82 16 5 C -0.08 -2.56 5.60 71.98 0.40 -2.15 16 6 S -0.28 -10.90 20.31 -56.49 -1.15 -12.05 16 7 C -0.01 -0.65 5.80 71.98 0.42 -0.23 16 8 C 0.03 1.35 1.34 -52.93 -0.07 1.28 16 9 C -0.50 -27.31 8.49 25.60 0.22 -27.09 16 10 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 11 C 0.03 1.55 5.39 84.65 0.46 2.00 16 12 N -0.91 -51.58 12.90 21.45 0.28 -51.30 16 13 Si 0.94 43.87 29.55 68.60 2.03 45.90 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 17 C -0.18 -7.85 9.96 30.62 0.30 -7.54 16 18 C -0.15 -7.12 9.40 30.62 0.29 -6.84 16 19 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 20 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 21 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.35 6.55 9.04 -89.69 -0.81 5.74 16 23 H 0.35 9.22 7.86 -89.69 -0.70 8.52 16 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.05 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.06 2.50 8.09 -2.39 -0.02 2.48 16 28 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 29 H 0.09 3.49 8.14 -2.38 -0.02 3.47 16 30 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -58.77 282.90 2.03 -56.75 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -0.42 Total: 22.15 kcal Atomic # 6 Polarization: -42.48 SS G_CDS: 2.85 Total: -39.62 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -1.28 Total: -73.12 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -10.90 SS G_CDS: -1.15 Total: -12.05 kcal Total: -58.77 2.03 -56.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085313423.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.037 kcal (2) G-P(sol) polarization free energy of solvation -58.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds