Wall clock time and date at job start Mon Mar 30 2020 02:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47254 * 2 1 4 4 H 1.09002 * 109.46605 * 55.82251 * 3 2 1 5 5 C 1.50697 * 109.46932 * 175.82045 * 3 2 1 6 6 H 1.07998 * 119.99839 * 115.23138 * 5 3 2 7 7 C 1.37878 * 120.00135 * 295.22971 * 5 3 2 8 8 N 1.31513 * 120.00033 * 161.31327 * 7 5 3 9 9 Si 1.86798 * 120.00001 * 341.31192 * 7 5 3 10 10 H 1.48500 * 109.47078 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47064 * 300.00069 * 9 7 5 12 12 H 1.48501 * 109.47179 * 59.99777 * 9 7 5 13 13 N 1.46900 * 109.46923 * 295.82457 * 3 2 1 14 14 C 1.48566 * 110.99550 * 174.99882 * 13 3 2 15 15 C 1.54385 * 104.59310 * 159.03693 * 14 13 3 16 16 H 1.08995 * 110.32420 * 95.04194 * 15 14 13 17 17 O 1.42898 * 110.32136 * 217.25372 * 15 14 13 18 18 C 1.54258 * 105.05939 * 336.14611 * 15 14 13 19 19 H 1.09009 * 110.32350 * 118.89510 * 18 15 14 20 20 O 1.42902 * 110.32239 * 240.99970 * 18 15 14 21 21 C 1.48560 * 110.99838 * 290.41273 * 13 3 2 22 22 H 1.08996 * 109.47125 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47119 * 299.99813 * 1 2 3 24 24 H 1.08999 * 109.47085 * 59.99919 * 1 2 3 25 25 H 1.09004 * 109.47051 * 239.99896 * 2 1 3 26 26 H 1.09000 * 109.47159 * 120.00631 * 2 1 3 27 27 H 0.97005 * 119.99575 * 355.03044 * 8 7 5 28 28 H 1.08996 * 110.41034 * 277.81290 * 14 13 3 29 29 H 1.08998 * 110.41010 * 40.14256 * 14 13 3 30 30 H 0.96701 * 113.99786 * 298.54019 * 17 15 14 31 31 H 0.96701 * 113.99511 * 180.02562 * 20 18 15 32 32 H 1.08997 * 110.41578 * 319.74257 * 21 13 3 33 33 H 1.09000 * 110.41015 * 82.18951 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6169 1.9774 0.8502 5 6 3.5435 1.4437 0.1036 6 1 4.1407 1.8221 -0.7128 7 6 4.1566 0.9616 1.2406 8 7 5.4253 0.6167 1.2076 9 14 3.1853 0.7985 2.8278 10 1 4.0673 0.2613 3.8949 11 1 2.6734 2.1320 3.2341 12 1 2.0432 -0.1267 2.6163 13 7 1.6345 2.1052 -1.2467 14 6 2.0083 3.5430 -1.2312 15 6 2.0318 3.9549 -2.7189 16 1 1.0765 4.3947 -3.0051 17 8 3.0965 4.8764 -2.9620 18 6 2.2713 2.6429 -3.4942 19 1 1.4334 2.4388 -4.1610 20 8 3.4888 2.7213 -4.2382 21 6 2.3724 1.5488 -2.4098 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 5.9106 0.6329 0.3678 28 1 1.2630 4.1237 -0.6878 29 1 2.9930 3.6749 -0.7829 30 1 3.0224 5.7029 -2.4654 31 1 3.6912 1.9239 -4.7464 32 1 3.4149 1.3685 -2.1478 33 1 1.9012 0.6280 -2.7538 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086331123.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:31 Heat of formation + Delta-G solvation = -91.119950 kcal Electronic energy + Delta-G solvation = -15616.037622 eV Core-core repulsion = 13062.910204 eV Total energy + Delta-G solvation = -2553.127418 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.13116 -36.16861 -35.48896 -33.09022 -31.92152 -28.80244 -27.46960 -26.05907 -22.70204 -21.55473 -20.22075 -19.18524 -17.88134 -17.23441 -15.93185 -15.67010 -14.42953 -14.13124 -13.85212 -13.79956 -13.14379 -12.76461 -12.48523 -12.06748 -11.87133 -11.67339 -11.38900 -10.92681 -10.86795 -10.52086 -10.34978 -10.21587 -9.74799 -9.70609 -9.52213 -9.34140 -8.99967 -8.41983 -7.50556 -6.43025 -4.13706 3.36177 3.40163 3.57450 4.31043 4.46022 4.65438 5.03862 5.10804 5.19317 5.23532 5.52301 5.84547 5.90951 6.02049 6.07464 6.22913 6.30894 6.35668 6.64173 6.65885 6.73574 6.75925 6.90548 7.14548 7.18374 7.70777 7.79699 7.86971 8.07037 8.13525 8.33832 8.86834 9.55021 10.86956 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.031114 B = 0.011332 C = 0.010023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.700375 B = 2470.315752 C = 2792.829293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C 0.176 3.824 4 H 0.032 0.968 5 C -0.634 4.634 6 H 0.066 0.934 7 C 0.039 3.961 8 N -0.900 5.900 9 Si 1.037 2.963 10 H -0.286 1.286 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.495 5.495 14 C 0.002 3.998 15 C 0.107 3.893 16 H 0.062 0.938 17 O -0.545 6.545 18 C 0.104 3.896 19 H 0.060 0.940 20 O -0.545 6.545 21 C 0.001 3.999 22 H 0.033 0.967 23 H 0.041 0.959 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.269 0.731 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.368 0.632 31 H 0.368 0.632 32 H 0.082 0.918 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 3.010 -5.813 10.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C 0.068 3.932 4 H 0.049 0.951 5 C -0.672 4.672 6 H 0.084 0.916 7 C -0.167 4.167 8 N -0.533 5.533 9 Si 0.865 3.135 10 H -0.212 1.212 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.220 5.220 14 C -0.127 4.127 15 C 0.047 3.953 16 H 0.080 0.920 17 O -0.348 6.348 18 C 0.044 3.956 19 H 0.078 0.922 20 O -0.348 6.348 21 C -0.128 4.128 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.214 0.786 31 H 0.214 0.786 32 H 0.100 0.900 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.917 2.639 -4.382 10.280 hybrid contribution 0.486 0.306 -1.274 1.397 sum -8.431 2.945 -5.655 10.571 Atomic orbital electron populations 1.21751 0.97820 0.99256 1.01294 1.21931 0.93459 0.98944 1.01321 1.19689 0.95007 0.90719 0.87791 0.95062 1.22536 0.91466 1.47472 1.05709 0.91570 1.25689 0.96666 0.92329 1.02059 1.70830 1.10368 1.41691 1.30368 0.84174 0.75762 0.77214 0.76304 1.21220 1.21081 1.19713 1.65657 1.50760 1.01171 1.04421 1.23749 1.01719 0.92135 0.95065 1.22639 0.89317 0.88865 0.94494 0.92046 1.86695 1.48224 1.30025 1.69868 1.22674 0.86573 0.94337 0.91974 0.92179 1.86691 1.41385 1.41718 1.65026 1.23835 1.01029 0.96498 0.91423 0.94835 0.94034 0.92422 0.93233 0.92124 0.92149 0.91261 0.90891 0.78618 0.78641 0.89979 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.79 37.16 0.36 -2.23 16 2 C -0.12 -2.55 5.08 -26.73 -0.14 -2.68 16 3 C 0.18 4.07 1.35 -68.87 -0.09 3.98 16 4 H 0.03 0.75 6.82 -51.93 -0.35 0.40 16 5 C -0.63 -17.13 6.85 -34.44 -0.24 -17.36 16 6 H 0.07 1.97 5.88 -52.49 -0.31 1.67 16 7 C 0.04 1.11 5.29 -17.82 -0.09 1.01 16 8 N -0.90 -27.27 13.70 55.43 0.76 -26.51 16 9 Si 1.04 24.73 26.34 -169.99 -4.48 20.26 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -5.96 5.72 56.52 0.32 -5.64 16 13 N -0.49 -10.11 4.78 -223.40 -1.07 -11.17 16 14 C 0.00 0.04 6.05 -2.18 -0.01 0.03 16 15 C 0.11 1.82 4.42 -25.35 -0.11 1.71 16 16 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 17 O -0.55 -9.62 12.45 -56.60 -0.70 -10.32 16 18 C 0.10 1.80 4.42 -25.35 -0.11 1.69 16 19 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 20 O -0.55 -9.76 12.45 -56.60 -0.70 -10.46 16 21 C 0.00 0.01 5.22 -2.18 -0.01 0.00 16 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 1.01 7.73 -51.93 -0.40 0.60 16 25 H 0.05 1.07 7.07 -51.93 -0.37 0.70 16 26 H 0.06 1.38 4.83 -51.93 -0.25 1.13 16 27 H 0.27 8.18 8.73 -40.82 -0.36 7.83 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.65 6.66 -51.93 -0.35 1.30 16 30 H 0.37 4.70 9.11 45.56 0.41 5.11 16 31 H 0.37 4.83 9.12 45.56 0.42 5.25 16 32 H 0.08 1.92 5.38 -51.93 -0.28 1.64 16 33 H 0.07 1.24 7.65 -51.93 -0.40 0.84 16 LS Contribution 257.81 15.07 3.89 3.89 Total: -1.00 -31.90 257.81 -5.97 -37.87 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -3.22 Total: 10.31 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -0.44 Total: -13.84 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.31 Total: -37.69 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -1.41 Total: -20.78 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -4.48 Total: 20.26 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.90 -5.97 -37.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086331123.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.253 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds