Wall clock time and date at job start Mon Mar 30 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47254 * 2 1 4 4 H 1.09002 * 109.46605 * 55.82251 * 3 2 1 5 5 C 1.50697 * 109.46932 * 175.82045 * 3 2 1 6 6 H 1.07998 * 119.99839 * 115.23138 * 5 3 2 7 7 C 1.37878 * 120.00135 * 295.22971 * 5 3 2 8 8 N 1.31513 * 120.00033 * 161.31327 * 7 5 3 9 9 Si 1.86798 * 120.00001 * 341.31192 * 7 5 3 10 10 H 1.48500 * 109.47078 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47064 * 300.00069 * 9 7 5 12 12 H 1.48501 * 109.47179 * 59.99777 * 9 7 5 13 13 N 1.46900 * 109.46923 * 295.82457 * 3 2 1 14 14 C 1.48566 * 110.99550 * 174.99882 * 13 3 2 15 15 C 1.54385 * 104.59310 * 159.03693 * 14 13 3 16 16 H 1.08995 * 110.32420 * 95.04194 * 15 14 13 17 17 O 1.42898 * 110.32136 * 217.25372 * 15 14 13 18 18 C 1.54258 * 105.05939 * 336.14611 * 15 14 13 19 19 H 1.09009 * 110.32350 * 118.89510 * 18 15 14 20 20 O 1.42902 * 110.32239 * 240.99970 * 18 15 14 21 21 C 1.48560 * 110.99838 * 290.41273 * 13 3 2 22 22 H 1.08996 * 109.47125 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47119 * 299.99813 * 1 2 3 24 24 H 1.08999 * 109.47085 * 59.99919 * 1 2 3 25 25 H 1.09004 * 109.47051 * 239.99896 * 2 1 3 26 26 H 1.09000 * 109.47159 * 120.00631 * 2 1 3 27 27 H 0.97005 * 119.99575 * 355.03044 * 8 7 5 28 28 H 1.08996 * 110.41034 * 277.81290 * 14 13 3 29 29 H 1.08998 * 110.41010 * 40.14256 * 14 13 3 30 30 H 0.96701 * 113.99786 * 298.54019 * 17 15 14 31 31 H 0.96701 * 113.99511 * 180.02562 * 20 18 15 32 32 H 1.08997 * 110.41578 * 319.74257 * 21 13 3 33 33 H 1.09000 * 110.41015 * 82.18951 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6169 1.9774 0.8502 5 6 3.5435 1.4437 0.1036 6 1 4.1407 1.8221 -0.7128 7 6 4.1566 0.9616 1.2406 8 7 5.4253 0.6167 1.2076 9 14 3.1853 0.7985 2.8278 10 1 4.0673 0.2613 3.8949 11 1 2.6734 2.1320 3.2341 12 1 2.0432 -0.1267 2.6163 13 7 1.6345 2.1052 -1.2467 14 6 2.0083 3.5430 -1.2312 15 6 2.0318 3.9549 -2.7189 16 1 1.0765 4.3947 -3.0051 17 8 3.0965 4.8764 -2.9620 18 6 2.2713 2.6429 -3.4942 19 1 1.4334 2.4388 -4.1610 20 8 3.4888 2.7213 -4.2382 21 6 2.3724 1.5488 -2.4098 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 5.9106 0.6329 0.3678 28 1 1.2630 4.1237 -0.6878 29 1 2.9930 3.6749 -0.7829 30 1 3.0224 5.7029 -2.4654 31 1 3.6912 1.9239 -4.7464 32 1 3.4149 1.3685 -2.1478 33 1 1.9012 0.6280 -2.7538 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086331123.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:30 Heat of formation + Delta-G solvation = -119.349774 kcal Electronic energy + Delta-G solvation = -15617.261759 eV Core-core repulsion = 13062.910204 eV Total energy + Delta-G solvation = -2554.351555 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.65084 -37.76297 -36.85701 -34.89514 -33.81115 -30.36246 -28.99615 -27.87431 -24.50739 -23.12937 -21.65110 -21.08245 -19.55891 -18.91890 -17.39536 -17.15357 -16.12542 -15.86598 -15.52602 -15.21987 -14.81421 -14.50059 -14.10622 -13.65994 -13.44375 -13.37839 -13.02536 -12.55651 -12.42079 -12.29229 -12.07203 -11.64864 -11.46299 -11.36573 -11.14000 -10.95626 -10.69852 -10.53962 -9.39045 -8.61934 -6.37804 1.44218 1.49879 1.68708 2.47276 2.93801 3.02085 3.40178 3.51359 3.78515 3.79871 4.18565 4.35919 4.42261 4.50824 4.57035 4.67183 4.79216 4.89280 5.00140 5.03819 5.13555 5.23033 5.28229 5.44747 5.60092 5.83365 5.96733 6.07788 6.16792 6.66573 6.73920 6.97359 7.38799 8.59982 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.031114 B = 0.011332 C = 0.010023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.700375 B = 2470.315752 C = 2792.829293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.178 3.822 4 H 0.032 0.968 5 C -0.621 4.621 6 H 0.023 0.977 7 C -0.015 4.015 8 N -0.937 5.937 9 Si 1.076 2.924 10 H -0.293 1.293 11 H -0.267 1.267 12 H -0.237 1.237 13 N -0.484 5.484 14 C 0.001 3.999 15 C 0.109 3.891 16 H 0.101 0.899 17 O -0.567 6.567 18 C 0.105 3.895 19 H 0.098 0.902 20 O -0.567 6.567 21 C 0.004 3.996 22 H 0.055 0.945 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.040 0.960 26 H 0.047 0.953 27 H 0.250 0.750 28 H 0.094 0.906 29 H 0.027 0.973 30 H 0.387 0.613 31 H 0.386 0.614 32 H 0.033 0.967 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.884 3.316 -6.082 13.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.155 4.155 3 C 0.069 3.931 4 H 0.050 0.950 5 C -0.660 4.660 6 H 0.042 0.958 7 C -0.214 4.214 8 N -0.573 5.573 9 Si 0.897 3.103 10 H -0.220 1.220 11 H -0.193 1.193 12 H -0.161 1.161 13 N -0.208 5.208 14 C -0.128 4.128 15 C 0.049 3.951 16 H 0.119 0.881 17 O -0.374 6.374 18 C 0.045 3.955 19 H 0.116 0.884 20 O -0.373 6.373 21 C -0.125 4.125 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.112 0.888 29 H 0.046 0.954 30 H 0.236 0.764 31 H 0.234 0.766 32 H 0.051 0.949 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.110 2.957 -4.682 13.316 hybrid contribution 1.538 0.264 -1.294 2.027 sum -10.573 3.221 -5.976 12.565 Atomic orbital electron populations 1.21655 0.94351 1.01059 1.02094 1.21825 0.96455 0.96982 1.00260 1.19617 0.91884 0.92385 0.89248 0.94998 1.22702 0.93866 1.45455 1.03948 0.95839 1.27110 0.96710 0.91905 1.05677 1.70969 1.11858 1.45171 1.29263 0.83715 0.75557 0.78778 0.72238 1.21990 1.19254 1.16073 1.65646 1.50022 1.01741 1.03390 1.23819 0.99925 0.91803 0.97286 1.22768 0.90790 0.89058 0.92481 0.88121 1.86645 1.49033 1.31276 1.70397 1.22815 0.87512 0.93453 0.91724 0.88417 1.86642 1.42092 1.43245 1.65326 1.23789 0.98031 0.98441 0.92247 0.92587 0.93195 0.91654 0.94158 0.93491 0.94167 0.88766 0.95413 0.76393 0.76565 0.94920 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 9.79 71.98 0.71 -3.60 16 2 C -0.12 -4.82 5.08 30.60 0.16 -4.66 16 3 C 0.18 8.06 1.35 44.17 0.06 8.12 16 4 H 0.03 1.47 6.82 -2.39 -0.02 1.45 16 5 C -0.62 -34.68 6.85 25.60 0.18 -34.51 16 6 H 0.02 1.50 5.88 -2.91 -0.02 1.48 16 7 C -0.02 -0.87 5.29 84.65 0.45 -0.42 16 8 N -0.94 -59.40 13.70 21.45 0.29 -59.10 16 9 Si 1.08 49.49 26.34 68.60 1.81 51.30 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 12 H -0.24 -9.55 5.72 99.48 0.57 -8.99 16 13 N -0.48 -19.02 4.78 -860.71 -4.11 -23.14 16 14 C 0.00 0.02 6.05 86.45 0.52 0.55 16 15 C 0.11 3.44 4.42 31.49 0.14 3.58 16 16 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 17 O -0.57 -19.25 12.45 -128.55 -1.60 -20.85 16 18 C 0.10 3.39 4.42 31.49 0.14 3.53 16 19 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 20 O -0.57 -19.78 12.45 -128.55 -1.60 -21.38 16 21 C 0.00 0.15 5.22 86.45 0.45 0.60 16 22 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.06 2.00 7.73 -2.39 -0.02 1.98 16 25 H 0.04 1.70 7.07 -2.39 -0.02 1.68 16 26 H 0.05 2.04 4.83 -2.39 -0.01 2.03 16 27 H 0.25 16.24 8.73 -92.70 -0.81 15.43 16 28 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.03 1.28 6.66 -2.39 -0.02 1.26 16 30 H 0.39 9.32 9.11 -74.06 -0.67 8.64 16 31 H 0.39 9.83 9.12 -74.06 -0.68 9.16 16 32 H 0.03 1.60 5.38 -2.39 -0.01 1.59 16 33 H 0.08 2.91 7.65 -2.39 -0.02 2.89 16 Total: -1.00 -71.53 257.81 -2.82 -74.35 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -0.40 Total: 25.65 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 2.80 Total: -26.83 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -3.82 Total: -82.24 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -3.20 Total: -42.23 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 1.81 Total: 51.30 kcal Total: -71.53 -2.82 -74.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086331123.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.004 kcal (2) G-P(sol) polarization free energy of solvation -71.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds