Wall clock time and date at job start Mon Mar 30 2020 02:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47321 * 2 1 4 4 H 1.08998 * 109.47174 * 178.45645 * 3 2 1 5 5 C 1.50701 * 109.47106 * 58.45518 * 3 2 1 6 6 H 1.08002 * 120.00198 * 240.00320 * 5 3 2 7 7 C 1.37882 * 119.99852 * 60.00279 * 5 3 2 8 8 N 1.31519 * 119.99718 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99897 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47315 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46964 * 120.00238 * 9 7 5 12 12 H 1.48498 * 109.47152 * 240.00239 * 9 7 5 13 13 N 1.46900 * 109.46905 * 298.46022 * 3 2 1 14 14 C 1.48557 * 110.99976 * 180.91297 * 13 3 2 15 15 C 1.54380 * 104.59350 * 159.04170 * 14 13 3 16 16 H 1.08996 * 110.32878 * 95.04220 * 15 14 13 17 17 O 1.42902 * 110.31848 * 217.24972 * 15 14 13 18 18 C 1.54265 * 105.05988 * 336.14087 * 15 14 13 19 19 H 1.08998 * 110.31817 * 118.89799 * 18 15 14 20 20 O 1.42893 * 110.32446 * 241.10713 * 18 15 14 21 21 C 1.48565 * 110.99882 * 296.33312 * 13 3 2 22 22 H 1.09003 * 109.46978 * 54.43071 * 1 2 3 23 23 H 1.09000 * 109.47000 * 294.43327 * 1 2 3 24 24 H 1.09002 * 109.47069 * 174.43033 * 1 2 3 25 25 H 1.09006 * 109.46774 * 119.99383 * 2 1 3 26 26 H 1.08995 * 109.47193 * 239.99371 * 2 1 3 27 27 H 0.96996 * 119.99555 * 180.02562 * 8 7 5 28 28 H 1.08999 * 110.40724 * 277.81247 * 14 13 3 29 29 H 1.08997 * 110.40965 * 40.25980 * 14 13 3 30 30 H 0.96700 * 114.00280 * 298.53819 * 17 15 14 31 31 H 0.96702 * 113.99846 * 179.97438 * 20 18 15 32 32 H 1.08998 * 110.40623 * 319.73782 * 21 13 3 33 33 H 1.08994 * 110.41240 * 82.17522 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1297 1.4426 0.0277 5 6 1.5067 2.1639 1.2109 6 1 0.8886 3.0410 1.0882 7 6 1.8079 1.7042 2.4754 8 7 2.5610 0.6363 2.6248 9 14 1.1474 2.5988 3.9764 10 1 0.3330 3.7616 3.5410 11 1 0.3018 1.6729 4.7721 12 1 2.2818 3.0725 4.8093 13 7 1.5810 2.1242 -1.2176 14 6 2.0765 3.5239 -1.2631 15 6 1.9996 3.9155 -2.7544 16 1 1.0634 4.4337 -2.9620 17 8 3.1127 4.7383 -3.1095 18 6 2.0543 2.5792 -3.5231 19 1 1.1449 2.4414 -4.1079 20 8 3.2025 2.5420 -4.3728 21 6 2.1595 1.4926 -2.4316 22 1 -0.3633 0.5978 -0.8359 23 1 -0.3633 0.4251 0.9356 24 1 -0.3633 -1.0228 -0.0997 25 1 1.8933 -0.5138 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 2.7726 0.3127 3.5144 28 1 1.4362 4.1733 -0.6661 29 1 3.1063 3.5743 -0.9094 30 1 3.1552 5.5735 -2.6240 31 1 3.2893 1.7240 -4.8812 32 1 3.2022 1.2251 -2.2607 33 1 1.5819 0.6125 -2.7142 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086331125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:33 Heat of formation + Delta-G solvation = -92.617811 kcal Electronic energy + Delta-G solvation = -15453.191265 eV Core-core repulsion = 12899.998895 eV Total energy + Delta-G solvation = -2553.192370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.07396 -36.06797 -35.56409 -33.30393 -31.19249 -28.63365 -27.53401 -25.77399 -23.37749 -21.52429 -20.21938 -18.95252 -17.78906 -16.16983 -15.84953 -15.81017 -14.51639 -14.05254 -13.93576 -13.71796 -13.18527 -12.55176 -12.38643 -12.06991 -11.82076 -11.59244 -11.01827 -10.98295 -10.81310 -10.51503 -10.27311 -10.18610 -9.88942 -9.68387 -9.48146 -9.28071 -8.84892 -8.46567 -7.43852 -6.04198 -4.08034 3.26751 3.35141 3.38625 4.23268 4.39995 4.59834 5.01317 5.11587 5.19966 5.30907 5.50478 5.75614 5.90071 6.24088 6.29329 6.39652 6.45054 6.57997 6.60026 6.74510 7.06588 7.15383 7.32974 7.53179 7.65278 7.78362 7.79882 7.96805 8.07315 8.25925 8.46992 8.96360 9.55955 11.02627 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.037404 B = 0.009546 C = 0.008326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.402376 B = 2932.525799 C = 3362.147353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 C 0.206 3.794 4 H 0.001 0.999 5 C -0.498 4.498 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.494 5.494 14 C 0.017 3.983 15 C 0.102 3.898 16 H 0.066 0.934 17 O -0.548 6.548 18 C 0.106 3.894 19 H 0.066 0.934 20 O -0.547 6.547 21 C 0.000 4.000 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.015 0.985 25 H 0.091 0.909 26 H 0.012 0.988 27 H 0.260 0.740 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.370 0.630 31 H 0.368 0.632 32 H 0.047 0.953 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 2.814 -8.690 9.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.147 4.147 3 C 0.100 3.900 4 H 0.019 0.981 5 C -0.536 4.536 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.220 5.220 14 C -0.112 4.112 15 C 0.042 3.958 16 H 0.084 0.916 17 O -0.352 6.352 18 C 0.046 3.954 19 H 0.084 0.916 20 O -0.350 6.350 21 C -0.129 4.129 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.034 0.966 25 H 0.109 0.891 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.216 0.784 31 H 0.214 0.786 32 H 0.065 0.935 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.099 2.767 -8.677 9.346 hybrid contribution 0.301 0.202 1.205 1.259 sum -1.797 2.969 -7.471 8.238 Atomic orbital electron populations 1.21459 0.97196 0.97285 1.01845 1.21512 0.95324 0.97881 0.99966 1.19495 0.93300 0.91392 0.85811 0.98146 1.21039 1.31130 1.11898 0.89567 0.92064 1.24912 0.95203 0.95108 0.98914 1.69893 1.37442 1.23168 1.22552 0.86501 0.78667 0.79750 0.82875 1.19771 1.21019 1.21168 1.65492 1.53137 1.00739 1.02645 1.23621 0.99971 0.93479 0.94082 1.22753 0.88851 0.90061 0.94124 0.91646 1.86653 1.48300 1.33685 1.66526 1.22681 0.88162 0.94209 0.90358 0.91641 1.86687 1.46209 1.42279 1.59800 1.23799 0.98971 0.97398 0.92761 0.93571 0.92595 0.96597 0.89096 0.96945 0.93014 0.89998 0.93125 0.78424 0.78628 0.93480 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.46 37.16 0.35 -2.28 16 2 C -0.11 -2.57 5.31 -26.73 -0.14 -2.72 16 3 C 0.21 5.10 1.52 -68.86 -0.10 5.00 16 4 H 0.00 0.03 7.98 -51.93 -0.41 -0.39 16 5 C -0.50 -13.20 6.87 -34.44 -0.24 -13.43 16 6 H 0.06 1.63 7.01 -52.49 -0.37 1.26 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.02 11.34 55.43 0.63 -24.39 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.49 -10.39 4.40 -223.41 -0.98 -11.38 16 14 C 0.02 0.34 5.45 -2.18 -0.01 0.32 16 15 C 0.10 1.69 4.43 -25.35 -0.11 1.57 16 16 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 17 O -0.55 -9.05 12.45 -56.60 -0.70 -9.75 16 18 C 0.11 1.71 4.42 -25.35 -0.11 1.60 16 19 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 20 O -0.55 -8.77 12.44 -56.60 -0.70 -9.48 16 21 C 0.00 0.00 5.23 -2.18 -0.01 -0.02 16 22 H 0.05 0.97 7.49 -51.93 -0.39 0.58 16 23 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.09 2.41 6.11 -51.93 -0.32 2.09 16 26 H 0.01 0.26 6.96 -51.93 -0.36 -0.10 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.08 1.57 7.46 -51.93 -0.39 1.18 16 29 H 0.05 1.08 7.90 -51.93 -0.41 0.67 16 30 H 0.37 4.39 9.11 45.56 0.41 4.81 16 31 H 0.37 4.08 9.12 45.56 0.42 4.49 16 32 H 0.05 0.93 7.86 -51.93 -0.41 0.53 16 33 H 0.08 1.30 7.65 -51.93 -0.40 0.90 16 LS Contribution 264.25 15.07 3.98 3.98 Total: -1.00 -30.75 264.25 -6.68 -37.43 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -3.41 Total: 6.01 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.47 Total: -8.43 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.35 Total: -35.77 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.41 Total: -19.22 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.75 -6.68 -37.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086331125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.187 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds