Wall clock time and date at job start Mon Mar 30 2020 03:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46546 * 2 1 4 4 C 1.50690 * 109.47134 * 120.00035 * 2 1 3 5 5 H 1.08005 * 119.99873 * 120.00125 * 4 2 1 6 6 C 1.37879 * 120.00397 * 300.00131 * 4 2 1 7 7 N 1.31524 * 119.99493 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00509 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46810 * 89.99847 * 8 6 4 10 10 H 1.48502 * 109.47295 * 210.00067 * 8 6 4 11 11 H 1.48504 * 109.47069 * 330.00166 * 8 6 4 12 12 N 1.46898 * 109.47210 * 240.00283 * 2 1 3 13 13 C 1.47018 * 110.99928 * 306.04608 * 12 2 1 14 14 C 1.53095 * 109.29409 * 177.62963 * 13 12 2 15 15 O 1.43016 * 109.25799 * 56.82300 * 14 13 12 16 16 C 1.43015 * 113.74083 * 301.33083 * 15 14 13 17 17 H 1.08998 * 109.50233 * 298.73263 * 16 15 14 18 18 C 1.53005 * 109.50401 * 178.64593 * 16 15 14 19 19 O 1.42901 * 109.46983 * 65.00388 * 18 16 15 20 20 C 1.47014 * 111.03763 * 182.38422 * 12 2 1 21 21 H 1.09001 * 109.47455 * 300.00078 * 1 2 3 22 22 H 1.09005 * 109.46933 * 59.99982 * 1 2 3 23 23 H 1.08997 * 109.47117 * 179.97438 * 1 2 3 24 24 H 0.97001 * 119.99487 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.50864 * 57.67198 * 13 12 2 26 26 H 1.09003 * 109.50425 * 297.58837 * 13 12 2 27 27 H 1.08994 * 109.50879 * 176.75852 * 14 13 12 28 28 H 1.08995 * 109.50640 * 296.89211 * 14 13 12 29 29 H 1.09005 * 109.46702 * 185.00048 * 18 16 15 30 30 H 1.08994 * 109.47619 * 304.99794 * 18 16 15 31 31 H 0.96696 * 113.99769 * 179.97438 * 19 18 16 32 32 H 1.09006 * 109.46615 * 62.41273 * 20 12 2 33 33 H 1.08996 * 109.54154 * 302.33367 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6296 -0.5459 4.4123 10 1 1.3430 -0.9493 5.1120 11 1 2.4858 -2.5663 3.7119 12 7 2.0197 -0.6924 -1.1994 13 6 1.4339 -2.0365 -1.3080 14 6 1.9231 -2.6988 -2.5986 15 8 3.3529 -2.7296 -2.6004 16 6 3.9568 -1.4373 -2.4977 17 1 3.6631 -0.8294 -3.3534 18 6 5.4794 -1.5853 -2.4745 19 8 5.9259 -2.1124 -3.7255 20 6 3.4882 -0.7621 -1.2060 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7087 1.1612 3.4844 25 1 0.3468 -1.9592 -1.3279 26 1 1.7403 -2.6373 -0.4517 27 1 1.5371 -3.7166 -2.6544 28 1 1.5703 -2.1275 -3.4572 29 1 5.9367 -0.6101 -2.3072 30 1 5.7664 -2.2637 -1.6712 31 1 6.8836 -2.2325 -3.7824 32 1 3.8282 -1.3422 -0.3480 33 1 3.9012 0.2450 -1.1511 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086831149.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:31 Heat of formation + Delta-G solvation = -89.465174 kcal Electronic energy + Delta-G solvation = -15391.558117 eV Core-core repulsion = 12838.502455 eV Total energy + Delta-G solvation = -2553.055662 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.16193 -36.60185 -35.55036 -32.55043 -31.45541 -29.31439 -27.10366 -25.18671 -24.01167 -22.53087 -20.32448 -19.30819 -17.18082 -16.36894 -16.12446 -15.59191 -14.72257 -14.57229 -14.20117 -13.67349 -13.44718 -13.12288 -12.75154 -12.28563 -11.57542 -11.36732 -11.14479 -10.88451 -10.80141 -10.61286 -10.44054 -10.23980 -9.95397 -9.87331 -9.64610 -9.31477 -8.93875 -8.44034 -7.24382 -6.04104 -4.17258 3.23349 3.30889 3.34246 4.14899 4.26844 4.36048 5.03908 5.21397 5.35481 5.42600 5.60640 5.68432 5.77025 5.85869 5.94853 6.10413 6.16541 6.49396 6.63105 6.76974 6.86279 6.98195 7.09200 7.49776 7.63593 7.65711 7.73650 7.87659 8.06875 8.23983 8.35215 8.91441 9.50619 10.96141 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034339 B = 0.009216 C = 0.008213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.214859 B = 3037.629598 C = 3408.460867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.206 3.794 3 H 0.041 0.959 4 C -0.544 4.544 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.886 5.886 8 Si 0.888 3.112 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.535 5.535 13 C 0.021 3.979 14 C 0.064 3.936 15 O -0.382 6.382 16 C 0.094 3.906 17 H 0.064 0.936 18 C 0.085 3.915 19 O -0.568 6.568 20 C 0.036 3.964 21 H 0.085 0.915 22 H 0.015 0.985 23 H 0.028 0.972 24 H 0.262 0.738 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.374 0.626 32 H 0.051 0.949 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 -3.722 -7.542 9.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.100 3.900 3 H 0.059 0.941 4 C -0.583 4.583 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.716 3.284 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.260 5.260 13 C -0.108 4.108 14 C -0.013 4.013 15 O -0.301 6.301 16 C 0.035 3.965 17 H 0.082 0.918 18 C 0.007 3.993 19 O -0.373 6.373 20 C -0.093 4.093 21 H 0.104 0.896 22 H 0.034 0.966 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.220 0.780 32 H 0.070 0.930 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.507 -3.470 -7.945 9.771 hybrid contribution 0.964 -0.648 1.950 2.270 sum 5.471 -4.119 -5.994 9.101 Atomic orbital electron populations 1.21854 0.97646 0.99235 1.00472 1.19303 0.92366 0.94144 0.84151 0.94113 1.21696 1.31968 1.12948 0.91685 0.92541 1.24911 0.94769 0.94848 0.98908 1.69883 1.36285 1.22765 1.23532 0.86652 0.78679 0.80135 0.82902 1.20659 1.21111 1.20014 1.62729 1.04523 1.16196 1.42510 1.22643 1.00361 0.91295 0.96505 1.22700 0.80771 1.00365 0.97496 1.87933 1.19473 1.27992 1.94665 1.22169 0.90788 0.85253 0.98249 0.91808 1.22176 0.93587 0.97722 0.85854 1.86542 1.27150 1.87448 1.36113 1.22411 0.91061 1.00436 0.95392 0.89607 0.96556 0.95257 0.92838 0.90101 0.93569 0.89503 0.93258 0.92147 0.92897 0.78029 0.93040 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.54 37.16 0.32 -2.90 16 2 C 0.21 5.14 2.48 -68.87 -0.17 4.97 16 3 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.54 -14.53 7.12 -34.44 -0.25 -14.77 16 5 H 0.06 1.53 5.79 -52.48 -0.30 1.23 16 6 C 0.07 1.85 5.30 -17.81 -0.09 1.75 16 7 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 8 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.53 -11.61 4.77 -227.72 -1.09 -12.69 16 13 C 0.02 0.41 4.91 -3.71 -0.02 0.40 16 14 C 0.06 1.11 7.01 37.21 0.26 1.37 16 15 O -0.38 -7.29 10.43 -39.95 -0.42 -7.71 16 16 C 0.09 1.66 3.09 -26.68 -0.08 1.58 16 17 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 18 C 0.08 1.23 6.72 37.16 0.25 1.48 16 19 O -0.57 -7.97 13.63 -39.95 -0.54 -8.51 16 20 C 0.04 0.72 4.56 -3.71 -0.02 0.70 16 21 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 22 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 23 H 0.03 0.67 6.27 -51.93 -0.33 0.34 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.08 1.58 6.08 -51.93 -0.32 1.26 16 26 H 0.05 1.02 6.93 -51.93 -0.36 0.66 16 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.37 3.17 9.12 45.56 0.42 3.58 16 32 H 0.05 1.12 6.42 -51.93 -0.33 0.78 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 260.86 15.07 3.93 3.93 Total: -1.00 -30.11 260.86 -6.37 -36.47 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -4.06 Total: 2.09 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 0.20 Total: -5.44 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.46 Total: -36.87 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.96 Total: -16.22 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.11 -6.37 -36.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086831149.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.992 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds