Wall clock time and date at job start Mon Mar 30 2020 02:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00284 * 2 1 4 4 H 1.48498 * 109.46978 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47361 * 300.00312 * 3 2 1 6 6 H 1.48503 * 109.46773 * 60.00524 * 3 2 1 7 7 C 1.37884 * 119.99351 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46999 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47296 * 179.97438 * 10 9 7 12 12 C 1.47010 * 110.99738 * 293.63438 * 11 10 9 13 13 C 1.53101 * 109.25772 * 177.60825 * 12 11 10 14 14 O 1.43005 * 109.26043 * 56.84635 * 13 12 11 15 15 C 1.43023 * 113.73627 * 301.33198 * 14 13 12 16 16 H 1.08999 * 109.50605 * 298.72944 * 15 14 13 17 17 C 1.53009 * 109.50500 * 178.60683 * 15 14 13 18 18 O 1.42896 * 109.47156 * 65.21506 * 17 15 14 19 19 C 1.47005 * 111.00075 * 169.99680 * 11 10 9 20 20 H 0.97010 * 119.99347 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47501 * 59.99960 * 9 7 2 22 22 H 1.09002 * 109.46964 * 299.99565 * 9 7 2 23 23 H 1.08996 * 109.47342 * 59.99476 * 10 9 7 24 24 H 1.09002 * 109.46592 * 299.99407 * 10 9 7 25 25 H 1.09005 * 109.50762 * 297.54365 * 12 11 10 26 26 H 1.09005 * 109.51385 * 57.62757 * 12 11 10 27 27 H 1.09007 * 109.50597 * 176.78233 * 13 12 11 28 28 H 1.09004 * 109.50429 * 296.90847 * 13 12 11 29 29 H 1.08996 * 109.46719 * 185.21576 * 17 15 14 30 30 H 1.08997 * 109.46756 * 305.21683 * 17 15 14 31 31 H 0.96696 * 114.00139 * 179.97438 * 18 17 15 32 32 H 1.09001 * 109.50788 * 62.45816 * 19 11 10 33 33 H 1.09007 * 109.54578 * 302.34788 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5105 -4.9344 0.0001 12 6 0.7710 -5.1151 1.2578 13 6 -0.0255 -6.4209 1.1921 14 8 0.8682 -7.5058 0.9288 15 6 1.6044 -7.3627 -0.2890 16 1 0.9124 -7.3258 -1.1304 17 6 2.5508 -8.5533 -0.4568 18 8 1.7868 -9.7497 -0.6208 19 6 2.4174 -6.0665 -0.2383 20 1 -0.4850 0.8402 0.0004 21 1 0.6238 -2.5567 -0.8902 22 1 0.6246 -2.5571 0.8897 23 1 2.8717 -3.6045 0.8894 24 1 2.8716 -3.6044 -0.8906 25 1 1.4735 -5.1587 2.0900 26 1 0.0877 -4.2781 1.4019 27 1 -0.5301 -6.5877 2.1438 28 1 -0.7649 -6.3564 0.3937 29 1 3.1768 -8.3986 -1.3355 30 1 3.1816 -8.6433 0.4275 31 1 2.3230 -10.5464 -0.7332 32 1 3.1463 -6.1254 0.5700 33 1 2.9361 -5.9248 -1.1865 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086831622.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:19 Heat of formation + Delta-G solvation = -98.118405 kcal Electronic energy + Delta-G solvation = -14729.052576 eV Core-core repulsion = 12175.621682 eV Total energy + Delta-G solvation = -2553.430894 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.46919 -36.78788 -35.58824 -33.00406 -31.77248 -29.96176 -27.59933 -25.32747 -23.65119 -22.56882 -20.46859 -19.87531 -17.41919 -16.63188 -16.36733 -15.64753 -15.06947 -14.76270 -14.56118 -14.02024 -13.94084 -13.36870 -13.06456 -12.49320 -12.14750 -11.80138 -11.42157 -11.11222 -10.98916 -10.89830 -10.56964 -10.39933 -10.11622 -9.92033 -9.62117 -9.20331 -9.13400 -8.36140 -7.85057 -6.02332 -4.04935 3.29596 3.37044 3.40806 3.84775 3.91732 4.40441 4.54165 5.03874 5.10932 5.24023 5.31781 5.33785 5.37229 5.46774 5.58213 5.70409 5.76689 6.02752 6.12613 6.21558 6.32573 6.42055 6.89862 7.32341 7.37681 7.43500 7.53511 7.73589 7.84361 8.03545 8.39718 9.02203 9.58976 11.09107 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.069281 B = 0.005637 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.055703 B = 4966.070857 C = 5219.978957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.063 3.937 11 N -0.536 5.536 12 C 0.017 3.983 13 C 0.064 3.936 14 O -0.380 6.380 15 C 0.094 3.906 16 H 0.072 0.928 17 C 0.085 3.915 18 O -0.566 6.566 19 C 0.026 3.974 20 H 0.260 0.740 21 H 0.025 0.975 22 H 0.017 0.983 23 H 0.022 0.978 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.376 0.624 32 H 0.037 0.963 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 -14.850 0.193 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.063 4.063 11 N -0.261 5.261 12 C -0.111 4.111 13 C -0.013 4.013 14 O -0.299 6.299 15 C 0.036 3.964 16 H 0.090 0.910 17 C 0.007 3.993 18 O -0.370 6.370 19 C -0.103 4.103 20 H 0.070 0.930 21 H 0.044 0.956 22 H 0.035 0.965 23 H 0.040 0.960 24 H 0.081 0.919 25 H 0.054 0.946 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.223 0.777 32 H 0.055 0.945 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.295 -14.442 -0.007 14.813 hybrid contribution 1.527 0.910 0.458 1.836 sum 4.822 -13.533 0.451 14.373 Atomic orbital electron populations 1.69986 1.06038 1.26522 1.50639 1.24995 0.94836 0.99214 0.95242 0.86530 0.80060 0.83754 0.77612 1.19779 1.20949 1.21005 1.21215 0.93018 0.90996 1.50916 0.92730 1.19103 0.93974 0.90063 0.97848 1.22376 0.96814 0.87999 0.99131 1.62296 1.27593 1.02396 1.33819 1.22822 0.98520 0.98969 0.90838 1.22702 0.91705 0.85463 1.01403 1.87966 1.56997 1.44296 1.40605 1.22101 0.93498 0.92306 0.88510 0.90984 1.22141 0.92729 0.84517 0.99897 1.86552 1.37263 1.17079 1.96129 1.22630 0.94787 0.91274 1.01618 0.93008 0.95637 0.96463 0.96017 0.91899 0.94602 0.88415 0.88714 0.92330 0.92073 0.92961 0.77731 0.94492 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.71 4.91 -27.89 -0.14 0.58 16 10 C 0.06 1.35 4.89 -3.82 -0.02 1.33 16 11 N -0.54 -10.04 4.73 -234.31 -1.11 -11.15 16 12 C 0.02 0.29 5.44 -3.71 -0.02 0.27 16 13 C 0.06 0.99 7.01 37.21 0.26 1.25 16 14 O -0.38 -6.21 10.44 -39.72 -0.41 -6.62 16 15 C 0.09 1.38 3.09 -26.68 -0.08 1.30 16 16 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 17 C 0.09 0.97 6.71 37.16 0.25 1.22 16 18 O -0.57 -6.64 13.63 -39.72 -0.54 -7.18 16 19 C 0.03 0.40 4.93 -3.72 -0.02 0.38 16 20 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 21 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.02 0.47 6.51 -51.93 -0.34 0.13 16 23 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 24 H 0.06 1.30 8.04 -51.93 -0.42 0.89 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.10 1.85 6.38 -51.93 -0.33 1.51 16 27 H 0.09 1.24 8.14 -51.92 -0.42 0.81 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.38 2.36 9.12 45.56 0.42 2.78 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 LS Contribution 271.93 15.07 4.10 4.10 Total: -1.00 -32.45 271.93 -6.86 -39.32 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -4.44 Total: -1.75 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.18 Total: -7.20 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.37 Total: -37.22 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.96 Total: -13.80 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.45 -6.86 -39.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086831622.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.802 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds