Wall clock time and date at job start Mon Mar 30 2020 02:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00284 * 2 1 4 4 H 1.48498 * 109.46978 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47361 * 300.00312 * 3 2 1 6 6 H 1.48503 * 109.46773 * 60.00524 * 3 2 1 7 7 C 1.37884 * 119.99351 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46999 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47296 * 179.97438 * 10 9 7 12 12 C 1.47010 * 110.99738 * 293.63438 * 11 10 9 13 13 C 1.53101 * 109.25772 * 177.60825 * 12 11 10 14 14 O 1.43005 * 109.26043 * 56.84635 * 13 12 11 15 15 C 1.43023 * 113.73627 * 301.33198 * 14 13 12 16 16 H 1.08999 * 109.50605 * 298.72944 * 15 14 13 17 17 C 1.53009 * 109.50500 * 178.60683 * 15 14 13 18 18 O 1.42896 * 109.47156 * 65.21506 * 17 15 14 19 19 C 1.47005 * 111.00075 * 169.99680 * 11 10 9 20 20 H 0.97010 * 119.99347 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47501 * 59.99960 * 9 7 2 22 22 H 1.09002 * 109.46964 * 299.99565 * 9 7 2 23 23 H 1.08996 * 109.47342 * 59.99476 * 10 9 7 24 24 H 1.09002 * 109.46592 * 299.99407 * 10 9 7 25 25 H 1.09005 * 109.50762 * 297.54365 * 12 11 10 26 26 H 1.09005 * 109.51385 * 57.62757 * 12 11 10 27 27 H 1.09007 * 109.50597 * 176.78233 * 13 12 11 28 28 H 1.09004 * 109.50429 * 296.90847 * 13 12 11 29 29 H 1.08996 * 109.46719 * 185.21576 * 17 15 14 30 30 H 1.08997 * 109.46756 * 305.21683 * 17 15 14 31 31 H 0.96696 * 114.00139 * 179.97438 * 18 17 15 32 32 H 1.09001 * 109.50788 * 62.45816 * 19 11 10 33 33 H 1.09007 * 109.54578 * 302.34788 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5105 -4.9344 0.0001 12 6 0.7710 -5.1151 1.2578 13 6 -0.0255 -6.4209 1.1921 14 8 0.8682 -7.5058 0.9288 15 6 1.6044 -7.3627 -0.2890 16 1 0.9124 -7.3258 -1.1304 17 6 2.5508 -8.5533 -0.4568 18 8 1.7868 -9.7497 -0.6208 19 6 2.4174 -6.0665 -0.2383 20 1 -0.4850 0.8402 0.0004 21 1 0.6238 -2.5567 -0.8902 22 1 0.6246 -2.5571 0.8897 23 1 2.8717 -3.6045 0.8894 24 1 2.8716 -3.6044 -0.8906 25 1 1.4735 -5.1587 2.0900 26 1 0.0877 -4.2781 1.4019 27 1 -0.5301 -6.5877 2.1438 28 1 -0.7649 -6.3564 0.3937 29 1 3.1768 -8.3986 -1.3355 30 1 3.1816 -8.6433 0.4275 31 1 2.3230 -10.5464 -0.7332 32 1 3.1463 -6.1254 0.5700 33 1 2.9361 -5.9248 -1.1865 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086831622.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:19 Heat of formation + Delta-G solvation = -124.355676 kcal Electronic energy + Delta-G solvation = -14730.190310 eV Core-core repulsion = 12175.621682 eV Total energy + Delta-G solvation = -2554.568628 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.74505 -37.81825 -36.97220 -35.05505 -32.97210 -31.81464 -29.01150 -26.89947 -25.21318 -23.98982 -21.96294 -21.37256 -18.66481 -18.27277 -17.57349 -17.10074 -16.56618 -16.29378 -16.08060 -15.50142 -15.04268 -14.76328 -14.51596 -14.13299 -13.81723 -13.25572 -13.04817 -12.87435 -12.56584 -12.43650 -12.07489 -11.89143 -11.65352 -11.36376 -11.26576 -10.95464 -10.61580 -10.54983 -9.33596 -8.21379 -6.32831 1.40383 1.40707 1.53952 2.38903 2.69649 2.80143 3.12462 3.36143 3.93128 4.01111 4.07226 4.17614 4.20272 4.34893 4.43457 4.55208 4.57366 4.60217 4.65910 4.83746 4.90417 4.98072 5.04674 5.42689 5.60385 5.74218 5.99755 6.08616 6.18011 6.26653 6.84130 6.94739 7.36579 8.91051 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.069281 B = 0.005637 C = 0.005363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.055703 B = 4966.070857 C = 5219.978957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.035 3.965 10 C 0.080 3.920 11 N -0.551 5.551 12 C 0.019 3.981 13 C 0.070 3.930 14 O -0.390 6.390 15 C 0.089 3.911 16 H 0.059 0.941 17 C 0.091 3.909 18 O -0.588 6.588 19 C 0.028 3.972 20 H 0.264 0.736 21 H -0.007 1.007 22 H -0.005 1.005 23 H 0.022 0.978 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.119 0.881 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.400 0.600 32 H 0.044 0.956 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.856 -15.452 0.112 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.079 0.921 9 C -0.002 4.002 10 C -0.047 4.047 11 N -0.276 5.276 12 C -0.110 4.110 13 C -0.007 4.007 14 O -0.309 6.309 15 C 0.031 3.969 16 H 0.077 0.923 17 C 0.013 3.987 18 O -0.397 6.397 19 C -0.100 4.100 20 H 0.073 0.927 21 H 0.011 0.989 22 H 0.013 0.987 23 H 0.041 0.959 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.137 0.863 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.250 0.750 32 H 0.062 0.938 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.913 -15.085 -0.092 15.865 hybrid contribution 0.991 1.032 0.469 1.506 sum 5.904 -14.053 0.377 15.247 Atomic orbital electron populations 1.70120 1.07859 1.27754 1.51439 1.25963 0.95733 1.03341 0.94565 0.85367 0.79062 0.78621 0.77786 1.18501 1.20349 1.20384 1.21642 0.93561 0.92176 1.50921 0.92075 1.18930 0.94235 0.91903 0.95169 1.22013 0.95436 0.87828 0.99438 1.62193 1.28387 1.02537 1.34532 1.22788 0.98271 0.99429 0.90479 1.22706 0.91201 0.84196 1.02579 1.87965 1.57207 1.44312 1.41420 1.22267 0.93636 0.93543 0.87435 0.92265 1.22113 0.91740 0.83276 1.01613 1.86480 1.38738 1.18239 1.96243 1.22701 0.94435 0.90174 1.02676 0.92733 0.98871 0.98655 0.95949 0.91171 0.94504 0.90710 0.86328 0.92774 0.89266 0.92081 0.75002 0.93782 0.88231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.04 1.88 4.91 29.85 0.15 2.03 16 10 C 0.08 3.40 4.89 86.30 0.42 3.83 16 11 N -0.55 -20.53 4.73 -895.22 -4.23 -24.76 16 12 C 0.02 0.66 5.44 86.32 0.47 1.13 16 13 C 0.07 2.11 7.01 72.02 0.50 2.61 16 14 O -0.39 -12.18 10.44 -144.69 -1.51 -13.69 16 15 C 0.09 2.46 3.09 30.63 0.09 2.56 16 16 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 17 C 0.09 1.81 6.71 71.99 0.48 2.29 16 18 O -0.59 -12.35 13.63 -144.69 -1.97 -14.32 16 19 C 0.03 0.82 4.93 86.32 0.43 1.25 16 20 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 21 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 22 H 0.00 -0.28 6.51 -2.39 -0.02 -0.29 16 23 H 0.02 0.94 8.12 -2.39 -0.02 0.92 16 24 H 0.07 2.86 8.04 -2.39 -0.02 2.84 16 25 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.07 2.95 6.38 -2.38 -0.02 2.94 16 27 H 0.12 2.95 8.14 -2.38 -0.02 2.93 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.40 3.90 9.12 -74.06 -0.68 3.23 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 2.54 8.09 -2.38 -0.02 2.52 16 Total: -1.00 -69.55 271.93 -1.75 -71.30 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 0.41 Total: 6.59 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: 3.24 Total: -14.59 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -3.95 Total: -81.45 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -3.48 Total: -28.02 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -69.55 -1.75 -71.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086831622.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.053 kcal (2) G-P(sol) polarization free energy of solvation -69.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds