Wall clock time and date at job start Mon Mar 30 2020 02:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47550 * 2 1 4 4 C 1.50703 * 109.47070 * 240.00061 * 2 1 3 5 5 H 1.08001 * 120.00191 * 245.46255 * 4 2 1 6 6 C 1.37881 * 119.99745 * 65.45992 * 4 2 1 7 7 N 1.31515 * 120.00149 * 9.54932 * 6 4 2 8 8 Si 1.86797 * 119.99990 * 189.54689 * 6 4 2 9 9 H 1.48490 * 109.47194 * 84.99502 * 8 6 4 10 10 H 1.48500 * 109.47242 * 204.99808 * 8 6 4 11 11 H 1.48506 * 109.47150 * 324.99370 * 8 6 4 12 12 N 1.46904 * 109.47542 * 120.00592 * 2 1 3 13 13 C 1.46905 * 110.99565 * 274.99862 * 12 2 1 14 14 C 1.52997 * 109.47087 * 179.97438 * 13 12 2 15 15 H 1.09003 * 110.99107 * 304.21656 * 14 13 12 16 16 C 1.55149 * 111.13457 * 180.02562 * 14 13 12 17 17 C 1.52935 * 108.96365 * 200.64945 * 16 14 13 18 18 C 1.53709 * 112.49064 * 30.09780 * 17 16 14 19 19 S 1.83390 * 105.05957 * 357.12457 * 18 17 16 20 20 H 1.09002 * 109.46730 * 303.75675 * 1 2 3 21 21 H 1.08997 * 109.47424 * 63.75493 * 1 2 3 22 22 H 1.09002 * 109.47366 * 183.75789 * 1 2 3 23 23 H 0.96998 * 120.00075 * 179.97438 * 7 6 4 24 24 H 1.00893 * 111.00524 * 151.04807 * 12 2 1 25 25 H 1.09000 * 109.47389 * 59.99930 * 13 12 2 26 26 H 1.08994 * 109.46943 * 299.99765 * 13 12 2 27 27 H 1.09000 * 109.60122 * 80.71825 * 16 14 13 28 28 H 1.08998 * 109.45279 * 320.49109 * 16 14 13 29 29 H 1.08998 * 108.89354 * 269.30697 * 17 16 14 30 30 H 1.09003 * 108.88758 * 150.89110 * 17 16 14 31 31 H 1.09006 * 110.33881 * 116.04721 * 18 17 16 32 32 H 1.08998 * 110.34500 * 238.19456 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5785 -1.6371 -1.1339 6 6 1.7945 -0.1773 -2.4796 7 7 1.2990 1.0356 -2.5935 8 14 2.1761 -1.1778 -4.0102 9 1 1.0244 -2.0609 -4.3243 10 1 2.4228 -0.2610 -5.1521 11 1 3.3848 -2.0068 -3.7711 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2225 2.3469 14 6 2.5952 -0.5333 3.5744 15 1 1.9774 -1.4072 3.7810 16 6 2.6763 0.3991 4.8118 17 6 3.6402 -0.2102 5.8309 18 6 4.7499 -1.0411 5.1669 19 16 4.3648 -1.0043 3.3742 20 1 -0.3633 0.5711 0.8544 21 1 -0.3634 0.4544 -0.9217 22 1 -0.3634 -1.0255 0.0674 23 1 1.1321 1.4108 -3.4723 24 1 2.9173 -1.1205 1.0287 25 1 1.0872 0.6162 2.5526 26 1 2.7589 1.0460 2.1182 27 1 1.6873 0.5002 5.2589 28 1 3.0406 1.3793 4.5045 29 1 3.0776 -0.8514 6.5094 30 1 4.0982 0.5933 6.4076 31 1 5.7245 -0.5902 5.3544 32 1 4.7295 -2.0658 5.5379 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087471351.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:38 Heat of formation + Delta-G solvation = -17.233568 kcal Electronic energy + Delta-G solvation = -12532.776219 eV Core-core repulsion = 10425.605625 eV Total energy + Delta-G solvation = -2107.170593 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -36.83937 -35.33508 -32.69781 -30.49350 -27.91425 -25.55444 -24.91109 -22.21300 -20.46896 -19.66355 -16.62829 -16.55127 -15.38465 -14.88091 -14.58912 -14.13688 -13.53420 -13.17594 -12.89675 -12.26695 -12.16962 -11.72071 -11.60534 -11.28663 -10.98290 -10.75818 -10.72540 -10.61718 -10.28660 -10.21112 -9.84242 -9.61338 -8.85478 -8.40503 -7.47150 -7.26577 -6.02813 -4.04454 2.01150 2.54264 3.34076 3.39633 3.43387 4.41979 4.51449 4.65569 4.89060 5.01960 5.26821 5.31383 5.41046 5.57553 5.61586 5.72572 5.81796 5.85164 6.06516 6.20512 6.40084 6.82930 7.09873 7.18219 7.41271 7.82138 7.87478 8.19205 8.37179 8.70068 9.05942 9.60282 11.06586 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.052402 B = 0.006681 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.200820 B = 4189.832048 C = 4546.215505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.209 3.791 3 H 0.009 0.991 4 C -0.520 4.520 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.689 5.689 13 C 0.078 3.922 14 C -0.026 4.026 15 H 0.101 0.899 16 C -0.124 4.124 17 C -0.125 4.125 18 C -0.077 4.077 19 S -0.292 6.292 20 H 0.008 0.992 21 H 0.063 0.937 22 H 0.034 0.966 23 H 0.261 0.739 24 H 0.336 0.664 25 H 0.076 0.924 26 H 0.032 0.968 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 -1.142 14.961 15.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.102 3.898 3 H 0.027 0.973 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.321 5.321 13 C -0.053 4.053 14 C -0.155 4.155 15 H 0.119 0.881 16 C -0.164 4.164 17 C -0.164 4.164 18 C -0.225 4.225 19 S -0.066 6.066 20 H 0.027 0.973 21 H 0.082 0.918 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.154 0.846 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.155 -1.471 14.001 14.427 hybrid contribution 0.256 0.237 -0.097 0.362 sum 3.411 -1.234 13.904 14.369 Atomic orbital electron populations 1.21650 0.98273 0.98812 0.98952 1.19114 0.92090 0.92978 0.85650 0.97328 1.21222 1.35845 1.08202 0.90578 0.92171 1.24915 0.95223 0.94629 0.99045 1.69973 1.45065 1.13976 1.23804 0.86581 0.78793 0.80055 0.82414 1.20494 1.21379 1.19912 1.60768 1.32547 1.32759 1.05989 1.21751 0.99739 0.93989 0.89804 1.24310 0.92494 1.00966 0.97685 0.88093 1.22472 0.99987 0.99868 0.94033 1.21924 0.95894 0.99681 0.98895 1.23875 1.01657 1.02986 0.94008 1.88187 1.15217 1.93067 1.10093 0.97333 0.91832 0.94649 0.92928 0.84609 0.90615 0.95026 0.90145 0.90429 0.91314 0.90730 0.88890 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 9.27 37.16 0.34 -2.59 16 2 C 0.21 5.45 2.47 -68.86 -0.17 5.28 16 3 H 0.01 0.26 7.74 -51.93 -0.40 -0.14 16 4 C -0.52 -14.75 8.48 -34.44 -0.29 -15.04 16 5 H 0.06 1.71 7.69 -52.49 -0.40 1.30 16 6 C 0.06 1.82 5.17 -17.82 -0.09 1.72 16 7 N -0.89 -26.07 12.16 55.43 0.67 -25.39 16 8 Si 0.89 21.79 29.55 -169.99 -5.02 16.76 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.69 -15.32 6.30 -107.95 -0.68 -16.00 16 13 C 0.08 1.44 5.06 -3.82 -0.02 1.42 16 14 C -0.03 -0.38 3.56 -25.60 -0.09 -0.47 16 15 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 16 C -0.12 -1.41 5.81 -25.63 -0.15 -1.56 16 17 C -0.13 -1.20 6.33 -26.40 -0.17 -1.37 16 18 C -0.08 -0.84 7.38 37.53 0.28 -0.56 16 19 S -0.29 -4.57 21.93 -107.50 -2.36 -6.93 16 20 H 0.01 0.17 7.55 -51.93 -0.39 -0.22 16 21 H 0.06 1.70 6.83 -51.93 -0.35 1.35 16 22 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.34 7.70 7.45 -39.30 -0.29 7.41 16 25 H 0.08 1.34 7.51 -51.93 -0.39 0.95 16 26 H 0.03 0.61 8.05 -51.93 -0.42 0.20 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 270.96 15.07 4.08 4.08 Total: -1.00 -29.51 270.96 -8.83 -38.33 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.17 Total: 2.32 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -0.36 Total: -13.18 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.01 Total: -41.39 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -4.57 SS G_CDS: -2.36 Total: -6.93 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.51 -8.83 -38.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087471351.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.100 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds