Wall clock time and date at job start Mon Mar 30 2020 02:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47173 * 2 1 4 4 C 1.50699 * 109.47101 * 120.00671 * 2 1 3 5 5 H 1.07994 * 120.00011 * 119.99637 * 4 2 1 6 6 C 1.37880 * 120.00011 * 300.00023 * 4 2 1 7 7 N 1.31508 * 120.00163 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99551 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.46864 * 90.00439 * 8 6 4 10 10 H 1.48510 * 109.46793 * 210.00035 * 8 6 4 11 11 H 1.48494 * 109.47519 * 330.00310 * 8 6 4 12 12 C 1.50701 * 109.46910 * 240.00328 * 2 1 3 13 13 C 1.37789 * 120.11251 * 300.01327 * 12 2 1 14 14 C 1.38788 * 120.66660 * 180.02562 * 13 12 2 15 15 C 1.36670 * 120.52797 * 359.95958 * 14 13 12 16 16 C 1.39586 * 119.76411 * 0.02562 * 15 14 13 17 17 C 1.46495 * 134.03774 * 180.29289 * 16 15 14 18 18 C 1.34233 * 107.00046 * 180.13442 * 17 16 15 19 19 N 1.36837 * 109.93996 * 359.59422 * 18 17 16 20 20 H 0.97000 * 125.06572 * 180.30481 * 19 18 17 21 21 C 1.37694 * 109.87181 * 0.26491 * 19 18 17 22 22 H 1.08998 * 109.47017 * 299.99804 * 1 2 3 23 23 H 1.08997 * 109.46738 * 59.99809 * 1 2 3 24 24 H 1.09001 * 109.46928 * 179.97438 * 1 2 3 25 25 H 0.96998 * 120.00268 * 180.02562 * 7 6 4 26 26 H 1.07996 * 119.67090 * 0.02562 * 13 12 2 27 27 H 1.08000 * 119.73950 * 179.97438 * 14 13 12 28 28 H 1.07998 * 120.11689 * 179.97438 * 15 14 13 29 29 H 1.07997 * 126.49894 * 0.02562 * 17 16 15 30 30 H 1.08002 * 125.03336 * 179.86397 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 2.1372 -0.8600 3.5564 8 14 0.6259 1.2796 2.6541 9 1 -0.8020 0.8742 2.6993 10 1 0.9773 1.9950 3.9072 11 1 0.8491 2.1771 1.4924 12 6 2.0323 -0.7104 -1.2305 13 6 1.7006 -2.0294 -1.4511 14 6 2.1573 -2.6949 -2.5801 15 6 2.9442 -2.0521 -3.4941 16 6 3.2922 -0.7157 -3.2908 17 6 4.0901 0.2548 -4.0441 18 6 4.0754 1.4012 -3.3460 19 7 3.3260 1.2472 -2.2115 20 1 3.1659 1.9394 -1.5511 21 6 2.8323 -0.0366 -2.1474 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9026 -0.5289 4.4375 26 1 1.0790 -2.5507 -0.7382 27 1 1.8885 -3.7290 -2.7379 28 1 3.2962 -2.5765 -4.3702 29 1 4.5957 0.0805 -4.9823 30 1 4.5770 2.3118 -3.6387 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089209236.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:53 Heat of formation + Delta-G solvation = 33.126437 kcal Electronic energy + Delta-G solvation = -13895.257804 eV Core-core repulsion = 11654.827033 eV Total energy + Delta-G solvation = -2240.430771 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 215.101 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.01574 -38.22271 -36.19011 -33.87551 -31.58501 -30.01493 -29.18997 -27.12457 -24.47295 -22.65557 -22.09527 -20.74873 -18.90795 -18.37560 -17.06558 -16.66875 -15.93400 -15.34266 -15.22322 -14.91096 -14.55587 -14.12866 -13.78618 -13.45203 -13.28668 -13.07654 -12.75423 -12.51806 -12.21855 -11.94283 -11.67507 -11.22700 -11.12648 -10.76354 -10.29989 -9.00271 -8.39040 -8.29684 -6.35694 0.41021 0.85852 1.28544 1.31701 1.43275 1.98374 2.29125 2.44113 3.02026 3.15323 3.95235 4.08119 4.27229 4.36128 4.44986 4.57523 4.68706 4.76593 4.85998 4.88850 5.05278 5.11456 5.20445 5.36637 5.46598 5.60216 5.81632 5.89772 5.97786 6.06099 6.30298 6.44672 6.70190 6.80968 7.28351 8.85440 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.036229 B = 0.009990 C = 0.008874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.684176 B = 2802.026496 C = 3154.353531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 H 0.024 0.976 4 C -0.507 4.507 5 H 0.030 0.970 6 C 0.011 3.989 7 N -0.948 5.948 8 Si 0.953 3.047 9 H -0.267 1.267 10 H -0.298 1.298 11 H -0.247 1.247 12 C -0.066 4.066 13 C -0.119 4.119 14 C -0.146 4.146 15 C -0.099 4.099 16 C -0.131 4.131 17 C -0.227 4.227 18 C 0.057 3.943 19 N -0.598 5.598 20 H 0.418 0.582 21 C 0.066 3.934 22 H 0.034 0.966 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.266 0.734 26 H 0.110 0.890 27 H 0.140 0.860 28 H 0.144 0.856 29 H 0.169 0.831 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 4.862 -15.012 15.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.029 3.971 3 H 0.042 0.958 4 C -0.545 4.545 5 H 0.048 0.952 6 C -0.186 4.186 7 N -0.589 5.589 8 Si 0.780 3.220 9 H -0.193 1.193 10 H -0.226 1.226 11 H -0.171 1.171 12 C -0.069 4.069 13 C -0.139 4.139 14 C -0.165 4.165 15 C -0.117 4.117 16 C -0.136 4.136 17 C -0.252 4.252 18 C -0.069 4.069 19 N -0.201 5.201 20 H 0.256 0.744 21 C -0.041 4.041 22 H 0.053 0.947 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.128 0.872 27 H 0.158 0.842 28 H 0.162 0.838 29 H 0.187 0.813 30 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.567 4.972 -14.764 15.589 hybrid contribution -0.458 0.542 1.300 1.481 sum 0.109 5.514 -13.464 14.550 Atomic orbital electron populations 1.22083 0.96840 1.01418 0.99327 1.18062 0.93169 0.94879 0.91015 0.95773 1.21187 1.30868 1.12260 0.90164 0.95171 1.25894 0.97297 1.00089 0.95281 1.70046 1.47660 1.42567 0.98602 0.85789 0.79113 0.79880 0.77240 1.19264 1.22620 1.17074 1.19174 0.98258 0.94880 0.94575 1.20764 1.01660 0.93425 0.98027 1.20859 1.00298 1.00673 0.94629 1.20442 0.98645 0.92528 1.00082 1.19694 1.02619 0.95336 0.95906 1.21961 1.07761 0.92273 1.03189 1.22509 0.96738 1.01273 0.86372 1.42001 1.44957 1.10379 1.22732 0.74424 1.18365 1.01135 0.86673 0.97950 0.94714 0.92546 0.92666 0.92504 0.87202 0.84197 0.83791 0.81326 0.77254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.96 8.49 71.98 0.61 -5.35 16 2 C 0.05 2.26 2.08 -12.28 -0.03 2.23 16 3 H 0.02 1.12 6.30 -2.39 -0.02 1.10 16 4 C -0.51 -29.31 8.82 25.60 0.23 -29.08 16 5 H 0.03 1.97 7.85 -2.91 -0.02 1.95 16 6 C 0.01 0.66 5.45 84.66 0.46 1.12 16 7 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 8 Si 0.95 44.75 24.37 68.60 1.67 46.42 16 9 H -0.27 -11.96 6.87 99.48 0.68 -11.28 16 10 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 11 H -0.25 -10.56 6.53 99.48 0.65 -9.91 16 12 C -0.07 -2.91 4.75 -19.77 -0.09 -3.00 16 13 C -0.12 -4.95 8.69 22.29 0.19 -4.75 16 14 C -0.15 -5.00 9.97 22.03 0.22 -4.78 16 15 C -0.10 -3.16 10.05 22.23 0.22 -2.94 16 16 C -0.13 -4.52 6.37 -20.20 -0.13 -4.65 16 17 C -0.23 -6.05 11.08 23.51 0.26 -5.79 16 18 C 0.06 1.38 11.81 83.00 0.98 2.37 16 19 N -0.60 -18.80 5.98 -187.60 -1.12 -19.92 16 20 H 0.42 11.99 8.31 -92.71 -0.77 11.22 16 21 C 0.07 2.55 6.94 39.03 0.27 2.82 16 22 H 0.03 1.49 3.27 -2.39 -0.01 1.49 16 23 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 24 H 0.05 2.33 7.38 -2.39 -0.02 2.31 16 25 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 26 H 0.11 4.72 7.55 -2.91 -0.02 4.70 16 27 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 28 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 29 H 0.17 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.21 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -70.26 248.66 4.35 -65.91 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.30 Total: 18.84 kcal Atomic # 6 Polarization: -55.00 SS G_CDS: 3.20 Total: -51.80 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -0.82 Total: -79.37 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.67 Total: 46.42 kcal Total: -70.26 4.35 -65.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089209236.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.034 kcal (2) G-P(sol) polarization free energy of solvation -70.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds