Wall clock time and date at job start Mon Mar 30 2020 02:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 120.00201 * 2 1 4 4 H 1.48500 * 109.47174 * 240.00257 * 3 2 1 5 5 H 1.48502 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47041 * 120.00179 * 3 2 1 7 7 C 1.37884 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99681 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99818 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46624 * 184.85025 * 9 7 2 11 11 C 1.46904 * 111.00045 * 285.62070 * 10 9 7 12 12 C 1.52991 * 109.47319 * 170.00113 * 11 10 9 13 13 H 1.09003 * 109.47301 * 60.00405 * 12 11 10 14 14 O 1.42898 * 109.47260 * 300.00513 * 12 11 10 15 15 C 1.52999 * 109.47321 * 180.02562 * 12 11 10 16 16 O 1.42903 * 109.47271 * 185.00202 * 15 12 11 17 17 C 1.46903 * 110.99878 * 161.67338 * 10 9 7 18 18 C 1.53003 * 117.49917 * 10.38831 * 17 10 9 19 19 C 1.52998 * 117.49358 * 301.76554 * 17 10 9 20 20 H 0.97003 * 119.99616 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.46870 * 64.85401 * 9 7 2 22 22 H 1.08999 * 109.47474 * 304.84505 * 9 7 2 23 23 H 1.09006 * 109.47091 * 50.00060 * 11 10 9 24 24 H 1.08998 * 109.47412 * 290.00691 * 11 10 9 25 25 H 0.96705 * 113.99946 * 299.99412 * 14 12 11 26 26 H 1.09006 * 109.47044 * 304.99714 * 15 12 11 27 27 H 1.08994 * 109.47341 * 65.00032 * 15 12 11 28 28 H 0.96704 * 114.00166 * 179.97438 * 16 15 12 29 29 H 1.08997 * 115.55064 * 156.09873 * 17 10 9 30 30 H 1.08999 * 117.49726 * 359.97438 * 18 17 10 31 31 H 1.08995 * 117.49961 * 145.02412 * 18 17 10 32 32 H 1.09001 * 117.50130 * 214.98111 * 19 17 10 33 33 H 1.08999 * 117.50150 * 0.02562 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0046 -1.1942 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2013 -3.6133 0.1160 11 6 2.9184 -3.8280 -1.1481 12 6 4.0637 -4.8171 -0.9231 13 1 3.6602 -5.7657 -0.5687 14 8 4.9648 -4.2887 0.0520 15 6 4.8109 -5.0401 -2.2394 16 8 5.8055 -6.0500 -2.0574 17 6 1.5222 -4.8412 0.5509 18 6 -0.0077 -4.8354 0.5648 19 6 0.7695 -4.7983 1.8822 20 1 -0.4850 0.8401 0.0004 21 1 0.6908 -2.5952 -0.9306 22 1 0.5611 -2.5204 0.8431 23 1 3.3219 -2.8794 -1.5025 24 1 2.2311 -4.2309 -1.8919 25 1 5.3628 -3.4434 -0.1974 26 1 4.1063 -5.3586 -3.0078 27 1 5.2892 -4.1106 -2.5478 28 1 6.3193 -6.2441 -2.8534 29 1 2.0199 -5.7734 0.2839 30 1 -0.5104 -3.9203 0.2516 31 1 -0.5169 -5.7639 0.3067 32 1 0.7715 -5.7025 2.4909 33 1 0.7777 -3.8590 2.4351 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133704470.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:23 Heat of formation + Delta-G solvation = -67.263669 kcal Electronic energy + Delta-G solvation = -14991.390995 eV Core-core repulsion = 12439.298062 eV Total energy + Delta-G solvation = -2552.092932 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.64424 -37.25701 -35.49605 -33.42657 -32.23522 -29.68672 -26.91445 -24.40489 -22.66889 -21.67149 -21.36646 -18.94532 -17.35413 -16.74987 -16.01145 -15.82169 -15.01251 -14.90170 -14.21737 -13.95833 -13.15613 -12.79240 -12.60909 -12.30961 -12.11082 -11.34570 -11.23171 -10.92840 -10.76755 -10.67531 -10.33362 -10.16152 -10.07393 -9.86994 -9.69991 -9.37422 -9.15666 -8.43767 -7.08738 -6.04894 -4.06450 3.31104 3.35914 3.38686 4.05497 4.40181 4.49110 4.80867 4.97204 5.15750 5.27650 5.30660 5.52836 5.56053 5.58142 5.64715 5.74763 5.87383 6.21005 6.23595 6.25949 6.51601 6.64287 6.82137 7.23118 7.27129 7.59928 7.77733 8.05901 8.14929 8.21172 8.51554 9.00335 9.57471 11.05583 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.023828 B = 0.009709 C = 0.007478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.793735 B = 2883.168768 C = 3743.375881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.189 3.811 10 N -0.491 5.491 11 C 0.036 3.964 12 C 0.113 3.887 13 H 0.096 0.904 14 O -0.540 6.540 15 C 0.043 3.957 16 O -0.566 6.566 17 C 0.025 3.975 18 C -0.228 4.228 19 C -0.172 4.172 20 H 0.262 0.738 21 H -0.009 1.009 22 H 0.041 0.959 23 H 0.087 0.913 24 H 0.031 0.969 25 H 0.370 0.630 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.373 0.627 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.742 -8.823 -4.462 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.064 3.936 10 N -0.213 5.213 11 C -0.093 4.093 12 C 0.053 3.947 13 H 0.113 0.887 14 O -0.344 6.344 15 C -0.036 4.036 16 O -0.370 6.370 17 C -0.085 4.085 18 C -0.267 4.267 19 C -0.210 4.210 20 H 0.072 0.928 21 H 0.008 0.992 22 H 0.059 0.941 23 H 0.105 0.895 24 H 0.049 0.951 25 H 0.217 0.783 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.219 0.781 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.528 -9.082 -3.179 11.097 hybrid contribution -0.011 1.248 -1.576 2.010 sum 5.517 -7.835 -4.756 10.697 Atomic orbital electron populations 1.69947 1.06045 1.26919 1.50932 1.24987 0.94874 0.99283 0.95458 0.86556 0.79435 0.82749 0.78631 1.20358 1.21378 1.20103 1.21124 0.93464 0.89898 1.50083 0.91995 1.19880 0.90493 0.87059 0.96145 1.61888 1.28704 1.03076 1.27623 1.22559 0.95268 0.99521 0.91963 1.21948 0.88726 0.97350 0.86692 0.88668 1.86588 1.61675 1.40883 1.45239 1.23011 0.90819 0.90875 0.98896 1.86566 1.51892 1.59186 1.39361 1.22632 0.90249 0.94765 1.00875 1.23603 0.96934 1.03087 1.03099 1.22959 1.04380 1.02734 0.90944 0.92846 0.99175 0.94057 0.89473 0.95088 0.78342 0.93097 0.93204 0.78124 0.87911 0.87550 0.90149 0.89615 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.55 5.46 -17.81 -0.10 1.45 16 3 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.02 8.58 -34.44 -0.30 -14.32 16 8 H 0.06 1.68 7.57 -52.49 -0.40 1.28 16 9 C 0.19 4.83 3.38 -4.97 -0.02 4.81 16 10 N -0.49 -10.61 4.52 -228.08 -1.03 -11.64 16 11 C 0.04 0.66 4.45 -3.83 -0.02 0.64 16 12 C 0.11 1.82 3.19 -26.74 -0.09 1.73 16 13 H 0.10 1.59 6.40 -51.93 -0.33 1.25 16 14 O -0.54 -9.64 13.17 -40.10 -0.53 -10.17 16 15 C 0.04 0.55 6.68 37.16 0.25 0.79 16 16 O -0.57 -7.33 13.62 -40.10 -0.55 -7.88 16 17 C 0.02 0.47 5.83 -67.71 -0.39 0.08 16 18 C -0.23 -4.17 9.56 -26.73 -0.26 -4.43 16 19 C -0.17 -3.15 9.91 -26.73 -0.26 -3.41 16 20 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 21 H -0.01 -0.26 7.82 -51.93 -0.41 -0.66 16 22 H 0.04 1.14 5.63 -51.93 -0.29 0.85 16 23 H 0.09 1.68 7.21 -51.93 -0.37 1.31 16 24 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 25 H 0.37 5.58 9.05 45.56 0.41 5.99 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.37 2.86 9.12 45.56 0.42 3.28 16 29 H 0.10 1.76 6.34 -51.93 -0.33 1.43 16 30 H 0.11 2.24 6.02 -51.93 -0.31 1.92 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.10 2.01 7.47 -51.93 -0.39 1.62 16 LS Contribution 274.12 15.07 4.13 4.13 Total: -1.00 -31.98 274.12 -6.69 -38.67 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -3.25 Total: 8.82 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.18 Total: -12.64 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.29 Total: -37.33 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -1.07 Total: -18.05 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.98 -6.69 -38.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133704470.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.597 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds