Wall clock time and date at job start Mon Mar 30 2020 02:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86795 * 120.00201 * 2 1 4 4 H 1.48500 * 109.47174 * 240.00257 * 3 2 1 5 5 H 1.48502 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47041 * 120.00179 * 3 2 1 7 7 C 1.37884 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99681 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99818 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46624 * 184.85025 * 9 7 2 11 11 C 1.46904 * 111.00045 * 285.62070 * 10 9 7 12 12 C 1.52991 * 109.47319 * 170.00113 * 11 10 9 13 13 H 1.09003 * 109.47301 * 60.00405 * 12 11 10 14 14 O 1.42898 * 109.47260 * 300.00513 * 12 11 10 15 15 C 1.52999 * 109.47321 * 180.02562 * 12 11 10 16 16 O 1.42903 * 109.47271 * 185.00202 * 15 12 11 17 17 C 1.46903 * 110.99878 * 161.67338 * 10 9 7 18 18 C 1.53003 * 117.49917 * 10.38831 * 17 10 9 19 19 C 1.52998 * 117.49358 * 301.76554 * 17 10 9 20 20 H 0.97003 * 119.99616 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.46870 * 64.85401 * 9 7 2 22 22 H 1.08999 * 109.47474 * 304.84505 * 9 7 2 23 23 H 1.09006 * 109.47091 * 50.00060 * 11 10 9 24 24 H 1.08998 * 109.47412 * 290.00691 * 11 10 9 25 25 H 0.96705 * 113.99946 * 299.99412 * 14 12 11 26 26 H 1.09006 * 109.47044 * 304.99714 * 15 12 11 27 27 H 1.08994 * 109.47341 * 65.00032 * 15 12 11 28 28 H 0.96704 * 114.00166 * 179.97438 * 16 15 12 29 29 H 1.08997 * 115.55064 * 156.09873 * 17 10 9 30 30 H 1.08999 * 117.49726 * 359.97438 * 18 17 10 31 31 H 1.08995 * 117.49961 * 145.02412 * 18 17 10 32 32 H 1.09001 * 117.50130 * 214.98111 * 19 17 10 33 33 H 1.08999 * 117.50150 * 0.02562 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0046 -1.1942 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2013 -3.6133 0.1160 11 6 2.9184 -3.8280 -1.1481 12 6 4.0637 -4.8171 -0.9231 13 1 3.6602 -5.7657 -0.5687 14 8 4.9648 -4.2887 0.0520 15 6 4.8109 -5.0401 -2.2394 16 8 5.8055 -6.0500 -2.0574 17 6 1.5222 -4.8412 0.5509 18 6 -0.0077 -4.8354 0.5648 19 6 0.7695 -4.7983 1.8822 20 1 -0.4850 0.8401 0.0004 21 1 0.6908 -2.5952 -0.9306 22 1 0.5611 -2.5204 0.8431 23 1 3.3219 -2.8794 -1.5025 24 1 2.2311 -4.2309 -1.8919 25 1 5.3628 -3.4434 -0.1974 26 1 4.1063 -5.3586 -3.0078 27 1 5.2892 -4.1106 -2.5478 28 1 6.3193 -6.2441 -2.8534 29 1 2.0199 -5.7734 0.2839 30 1 -0.5104 -3.9203 0.2516 31 1 -0.5169 -5.7639 0.3067 32 1 0.7715 -5.7025 2.4909 33 1 0.7777 -3.8590 2.4351 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133704470.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:23 Heat of formation + Delta-G solvation = -94.551233 kcal Electronic energy + Delta-G solvation = -14992.574272 eV Core-core repulsion = 12439.298062 eV Total energy + Delta-G solvation = -2553.276210 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.13150 -38.52684 -36.64509 -35.29311 -34.05531 -31.16546 -28.74808 -25.92183 -24.46435 -23.16493 -22.72039 -20.55512 -18.83710 -18.23493 -17.47093 -17.12509 -16.66462 -16.57942 -15.89392 -15.31972 -14.50521 -14.32114 -14.26328 -13.74088 -13.62031 -13.21032 -12.91257 -12.72569 -12.52230 -12.34421 -12.00194 -11.72918 -11.58301 -11.15362 -11.11346 -11.00946 -10.77053 -10.56512 -8.79208 -8.19420 -6.29856 1.40807 1.44278 1.51841 2.39593 2.79274 3.08124 3.14135 3.49802 3.68676 3.95985 4.03529 4.15504 4.21028 4.23222 4.37084 4.52970 4.59661 4.76565 4.77515 4.81763 5.06348 5.13783 5.22048 5.29553 5.31345 5.65333 6.07086 6.37467 6.61491 6.85080 6.91308 6.96890 7.39520 8.90601 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.023828 B = 0.009709 C = 0.007478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.793735 B = 2883.168768 C = 3743.375881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.523 4.523 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.506 5.506 11 C 0.039 3.961 12 C 0.119 3.881 13 H 0.092 0.908 14 O -0.561 6.561 15 C 0.051 3.949 16 O -0.585 6.585 17 C 0.014 3.986 18 C -0.221 4.221 19 C -0.170 4.170 20 H 0.264 0.736 21 H -0.037 1.037 22 H 0.013 0.987 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.380 0.620 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.397 0.603 29 H 0.130 0.870 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.112 -9.578 -5.059 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.562 4.562 8 H 0.082 0.918 9 C 0.084 3.916 10 N -0.227 5.227 11 C -0.090 4.090 12 C 0.059 3.941 13 H 0.110 0.890 14 O -0.367 6.367 15 C -0.028 4.028 16 O -0.393 6.393 17 C -0.095 4.095 18 C -0.261 4.261 19 C -0.208 4.208 20 H 0.072 0.928 21 H -0.019 1.019 22 H 0.031 0.969 23 H 0.092 0.908 24 H 0.056 0.944 25 H 0.228 0.772 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.246 0.754 29 H 0.148 0.852 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.925 -9.857 -3.799 12.632 hybrid contribution -0.441 1.420 -1.390 2.036 sum 6.484 -8.437 -5.190 11.839 Atomic orbital electron populations 1.70085 1.07728 1.27896 1.51845 1.25903 0.95717 1.03131 0.94885 0.85452 0.78156 0.77962 0.79145 1.18855 1.21062 1.19607 1.21477 0.93707 0.91086 1.49891 0.91840 1.19448 0.90335 0.88426 0.93436 1.61782 1.27988 1.03392 1.29560 1.22568 0.95921 0.99804 0.90672 1.21867 0.87987 0.95976 0.88228 0.89048 1.86544 1.61954 1.41680 1.46495 1.22815 0.91217 0.91736 0.96984 1.86489 1.52233 1.59077 1.41504 1.22850 0.90712 0.94562 1.01392 1.23511 0.96444 1.02983 1.03121 1.23001 1.03984 1.02847 0.90924 0.92757 1.01933 0.96911 0.90789 0.94392 0.77245 0.91210 0.91951 0.75362 0.85218 0.91133 0.86746 0.86059 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.31 13.29 21.45 0.28 -56.02 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.52 -29.49 8.58 25.60 0.22 -29.27 16 8 H 0.06 3.47 7.57 -2.91 -0.02 3.45 16 9 C 0.21 11.10 3.38 85.56 0.29 11.39 16 10 N -0.51 -21.99 4.52 -875.52 -3.95 -25.94 16 11 C 0.04 1.40 4.45 86.30 0.38 1.79 16 12 C 0.12 3.63 3.19 30.59 0.10 3.72 16 13 H 0.09 2.85 6.40 -2.39 -0.02 2.83 16 14 O -0.56 -19.29 13.17 -144.32 -1.90 -21.19 16 15 C 0.05 1.17 6.68 71.98 0.48 1.65 16 16 O -0.58 -13.46 13.62 -144.32 -1.97 -15.43 16 17 C 0.01 0.54 5.83 44.92 0.26 0.80 16 18 C -0.22 -8.03 9.56 30.60 0.29 -7.74 16 19 C -0.17 -6.10 9.91 30.60 0.30 -5.80 16 20 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 21 H -0.04 -2.11 7.82 -2.39 -0.02 -2.13 16 22 H 0.01 0.75 5.63 -2.39 -0.01 0.73 16 23 H 0.07 2.84 7.21 -2.38 -0.02 2.82 16 24 H 0.04 1.31 8.12 -2.39 -0.02 1.29 16 25 H 0.38 11.05 9.05 -74.05 -0.67 10.38 16 26 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.40 4.83 9.12 -74.05 -0.68 4.16 16 29 H 0.13 4.13 6.34 -2.39 -0.02 4.11 16 30 H 0.07 3.09 6.02 -2.39 -0.01 3.08 16 31 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 33 H 0.07 2.87 7.47 -2.39 -0.02 2.85 16 Total: -1.00 -69.34 274.12 -2.94 -72.29 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -0.23 Total: 23.14 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 2.79 Total: -22.91 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -3.67 Total: -81.96 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -3.87 Total: -36.62 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.34 -2.94 -72.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133704470.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.262 kcal (2) G-P(sol) polarization free energy of solvation -69.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds