Wall clock time and date at job start Mon Mar 30 2020 02:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00224 * 2 1 4 4 H 1.48504 * 109.47072 * 0.02562 * 3 2 1 5 5 H 1.48492 * 109.47463 * 240.00183 * 3 2 1 6 6 H 1.48507 * 109.46992 * 119.99814 * 3 2 1 7 7 C 1.38811 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00031 * 217.11471 * 7 2 1 9 9 N 1.36942 * 120.00135 * 37.12201 * 7 2 1 10 10 C 1.46929 * 120.62696 * 16.93262 * 9 7 2 11 11 H 1.08999 * 109.58870 * 6.63295 * 10 9 7 12 12 C 1.53001 * 109.58750 * 246.20499 * 10 9 7 13 13 O 1.42894 * 109.47094 * 182.90855 * 12 10 9 14 14 C 1.53625 * 108.53857 * 126.37381 * 10 9 7 15 15 C 1.53042 * 109.24334 * 54.85682 * 14 10 9 16 16 C 1.53038 * 109.53568 * 298.50771 * 15 14 10 17 17 C 1.46915 * 120.63034 * 197.21922 * 9 7 2 18 18 H 1.09005 * 109.58947 * 113.79671 * 17 9 7 19 19 C 1.53001 * 109.59072 * 353.36781 * 17 9 7 20 20 O 1.42894 * 109.47181 * 295.00444 * 19 17 9 21 21 H 0.96999 * 119.99909 * 186.39999 * 1 2 3 22 22 H 1.09001 * 109.46764 * 302.90804 * 12 10 9 23 23 H 1.09000 * 109.47015 * 62.91151 * 12 10 9 24 24 H 0.96703 * 114.00533 * 180.02562 * 13 12 10 25 25 H 1.09006 * 109.63464 * 294.86147 * 14 10 9 26 26 H 1.08997 * 109.43089 * 174.72477 * 14 10 9 27 27 H 1.08996 * 109.45928 * 178.49055 * 15 14 10 28 28 H 1.09003 * 109.45793 * 58.53015 * 15 14 10 29 29 H 1.08997 * 109.50195 * 301.41466 * 16 15 14 30 30 H 1.08997 * 109.52648 * 181.33055 * 16 15 14 31 31 H 1.09000 * 109.47008 * 55.00124 * 19 17 9 32 32 H 1.09000 * 109.47653 * 174.99737 * 19 17 9 33 33 H 0.96702 * 114.00244 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1039 1.6964 -1.2124 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 2.9261 -1.2971 0.5638 9 7 1.5337 -2.2676 -0.7167 10 6 0.5243 -2.0726 -1.7665 11 1 0.3571 -1.0064 -1.9191 12 6 -0.7852 -2.7457 -1.3504 13 8 -1.7440 -2.6129 -2.4015 14 6 1.0429 -2.7059 -3.0665 15 6 1.4030 -4.1702 -2.8056 16 6 2.5151 -4.2447 -1.7569 17 6 2.0173 -3.6282 -0.4458 18 1 1.2037 -4.2320 -0.0438 19 6 3.1659 -3.5728 0.5635 20 8 4.2770 -2.8864 -0.0164 21 1 -0.4850 -0.8348 0.0936 22 1 -0.6042 -3.8026 -1.1549 23 1 -1.1676 -2.2694 -0.4475 24 1 -2.6004 -3.0173 -2.2062 25 1 1.9279 -2.1688 -3.4079 26 1 0.2673 -2.6525 -3.8304 27 1 1.7462 -4.6304 -3.7321 28 1 0.5236 -4.7010 -2.4407 29 1 3.3863 -3.6932 -2.1105 30 1 2.7879 -5.2865 -1.5885 31 1 2.8383 -3.0430 1.4580 32 1 3.4642 -4.5866 0.8306 33 1 5.0435 -2.8139 0.5687 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150233727.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:25 Heat of formation + Delta-G solvation = -76.651243 kcal Electronic energy + Delta-G solvation = -16016.757131 eV Core-core repulsion = 13464.257123 eV Total energy + Delta-G solvation = -2552.500008 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.64990 -36.30316 -35.05323 -33.27776 -31.05382 -29.85482 -26.65001 -25.18538 -23.44302 -21.70128 -20.46192 -18.64652 -17.01651 -16.75002 -16.31399 -15.06899 -14.61445 -14.14504 -13.49794 -13.47678 -13.25272 -12.97247 -12.29761 -12.08086 -11.94900 -11.47287 -11.12916 -10.65716 -10.56950 -10.32975 -9.97077 -9.92664 -9.89462 -9.47666 -9.27442 -9.22199 -8.93844 -8.13080 -6.88666 -6.01779 -2.95638 3.57169 3.65853 3.82078 4.60272 4.93087 5.00653 5.28423 5.42476 5.57475 5.68618 5.74515 5.93813 6.01316 6.05971 6.10920 6.25469 6.33738 6.40190 6.47182 6.55949 6.68262 6.85956 6.89586 7.04489 7.28669 7.36453 8.14917 8.28228 8.30136 8.68225 9.17965 9.96682 10.37469 11.27425 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.023050 B = 0.016627 C = 0.011233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.440537 B = 1683.602249 C = 2492.096812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.026 4.026 3 Si 1.045 2.955 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.345 4.345 8 H 0.077 0.923 9 N -0.577 5.577 10 C 0.174 3.826 11 H 0.099 0.901 12 C 0.063 3.937 13 O -0.573 6.573 14 C -0.124 4.124 15 C -0.111 4.111 16 C -0.126 4.126 17 C 0.174 3.826 18 H 0.030 0.970 19 C 0.088 3.912 20 O -0.548 6.548 21 H 0.268 0.732 22 H 0.026 0.974 23 H 0.050 0.950 24 H 0.363 0.637 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -8.266 -1.017 8.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.228 4.228 3 Si 0.876 3.124 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.473 4.473 8 H 0.095 0.905 9 N -0.302 5.302 10 C 0.067 3.933 11 H 0.117 0.883 12 C -0.017 4.017 13 O -0.375 6.375 14 C -0.163 4.163 15 C -0.148 4.148 16 C -0.165 4.165 17 C 0.067 3.933 18 H 0.048 0.952 19 C 0.010 3.990 20 O -0.351 6.351 21 H 0.081 0.919 22 H 0.044 0.956 23 H 0.068 0.932 24 H 0.208 0.792 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.348 -6.236 -1.858 6.918 hybrid contribution 0.079 -2.132 0.987 2.351 sum 2.427 -8.368 -0.871 8.757 Atomic orbital electron populations 1.70863 1.07071 1.30218 1.46759 1.25525 0.95978 1.01010 1.00256 0.83820 0.75326 0.77116 0.76172 1.21523 1.22313 1.22341 1.20111 1.06208 0.91225 1.29791 0.90494 1.44167 1.45785 1.01686 1.38514 1.20473 0.85610 1.00446 0.86800 0.88290 1.23015 0.90942 0.98033 0.89736 1.86472 1.25126 1.81870 1.44057 1.21970 1.00210 0.95252 0.98878 1.21433 0.98099 0.97432 0.97851 1.21924 0.98973 0.98617 0.96981 1.20514 0.92397 0.87792 0.92580 0.95244 1.22125 0.87257 0.92995 0.96588 1.86715 1.24926 1.79714 1.43746 0.91911 0.95586 0.93234 0.79250 0.92551 0.92428 0.93662 0.93112 0.90996 0.93796 0.93004 0.95482 0.79633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.09 12.21 55.49 0.68 -26.42 16 2 C -0.03 -0.74 4.44 -17.43 -0.08 -0.82 16 3 Si 1.05 25.85 30.04 -169.99 -5.11 20.74 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 5 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.35 -9.48 8.31 -15.06 -0.13 -9.60 16 8 H 0.08 2.10 5.32 -52.49 -0.28 1.82 16 9 N -0.58 -14.31 2.66 -157.03 -0.42 -14.73 16 10 C 0.17 4.22 2.07 -67.37 -0.14 4.08 16 11 H 0.10 2.81 5.90 -51.93 -0.31 2.50 16 12 C 0.06 1.36 6.06 37.16 0.23 1.58 16 13 O -0.57 -11.26 12.84 -35.23 -0.45 -11.71 16 14 C -0.12 -2.64 5.48 -26.39 -0.14 -2.79 16 15 C -0.11 -2.05 5.67 -26.69 -0.15 -2.20 16 16 C -0.13 -2.39 5.25 -26.61 -0.14 -2.53 16 17 C 0.17 3.64 2.87 -67.60 -0.19 3.45 16 18 H 0.03 0.62 7.41 -51.93 -0.38 0.23 16 19 C 0.09 1.67 5.91 37.16 0.22 1.89 16 20 O -0.55 -10.51 10.96 -35.23 -0.39 -10.89 16 21 H 0.27 7.90 5.16 -40.82 -0.21 7.69 16 22 H 0.03 0.53 5.71 -51.93 -0.30 0.23 16 23 H 0.05 1.17 5.96 -51.93 -0.31 0.86 16 24 H 0.36 5.19 9.12 45.56 0.42 5.60 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.06 1.18 7.51 -51.93 -0.39 0.80 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.92 6.55 -51.93 -0.34 0.58 16 29 H 0.07 1.50 7.37 -51.93 -0.38 1.11 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 1.05 7.13 -51.93 -0.37 0.68 16 32 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.36 5.03 9.12 45.56 0.42 5.45 16 LS Contribution 250.93 15.07 3.78 3.78 Total: -1.00 -32.14 250.93 -5.36 -37.49 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -2.92 Total: 8.69 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.53 Total: -6.94 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.26 Total: -41.15 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.84 Total: -22.61 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.11 Total: 20.74 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.14 -5.36 -37.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150233727.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.159 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds