Wall clock time and date at job start Mon Mar 30 2020 02:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.50124 * 2 1 4 4 C 1.53089 * 109.50916 * 239.86864 * 2 1 3 5 5 N 1.47018 * 109.25775 * 296.91129 * 4 2 1 6 6 C 1.47010 * 110.75251 * 301.38388 * 5 4 2 7 7 C 1.53097 * 109.25811 * 58.61409 * 6 5 4 8 8 H 1.09007 * 109.54347 * 63.10940 * 7 6 5 9 9 C 1.53000 * 109.50898 * 183.21601 * 7 6 5 10 10 O 1.42902 * 109.47265 * 184.78574 * 9 7 6 11 11 C 1.34925 * 116.99891 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00399 * 0.02562 * 11 10 9 13 13 C 1.38642 * 119.99741 * 179.72203 * 11 10 9 14 14 N 1.31574 * 119.99840 * 0.27848 * 13 11 10 15 15 Si 1.86803 * 119.99885 * 180.27983 * 13 11 10 16 16 H 1.48496 * 109.47141 * 59.99797 * 15 13 11 17 17 H 1.48490 * 109.47071 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46993 * 300.00074 * 15 13 11 19 19 O 1.43016 * 109.50614 * 120.07886 * 2 1 3 20 20 H 1.09002 * 109.47730 * 299.91315 * 1 2 3 21 21 H 1.08998 * 109.47320 * 59.91502 * 1 2 3 22 22 H 1.09000 * 109.46929 * 179.91696 * 1 2 3 23 23 H 1.09005 * 109.46907 * 180.08609 * 3 2 1 24 24 H 1.08997 * 109.47351 * 300.08286 * 3 2 1 25 25 H 1.09000 * 109.47288 * 60.08757 * 3 2 1 26 26 H 1.08999 * 109.50826 * 56.84578 * 4 2 1 27 27 H 1.09004 * 109.50623 * 176.97884 * 4 2 1 28 28 H 1.00902 * 110.99882 * 177.61225 * 5 4 2 29 29 H 1.09003 * 109.50764 * 298.68636 * 6 5 4 30 30 H 1.08998 * 109.50818 * 178.55138 * 6 5 4 31 31 H 1.08997 * 109.47213 * 64.78815 * 9 7 6 32 32 H 1.09005 * 109.46887 * 304.78150 * 9 7 6 33 33 H 0.97005 * 119.99691 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4423 0.0000 4 6 2.0412 -0.7244 -1.2480 5 7 1.6111 -2.1295 -1.2035 6 6 2.1186 -2.7915 0.0070 7 6 1.6066 -2.0464 1.2425 8 1 0.5188 -2.1059 1.2794 9 6 2.1961 -2.6819 2.5032 10 8 1.6322 -2.0589 3.6591 11 6 2.0491 -2.5072 4.8614 12 1 2.7777 -3.3024 4.9183 13 6 1.5468 -1.9428 6.0239 14 7 0.6595 -0.9738 5.9546 15 14 2.1298 -2.5582 7.6885 16 1 3.5978 -2.3651 7.8012 17 1 1.4459 -1.7973 8.7648 18 1 1.8087 -4.0018 7.8228 19 8 2.0075 -0.6756 1.1665 20 1 -0.3634 0.5125 0.8907 21 1 -0.3634 0.5151 -0.8892 22 1 -0.3633 -1.0277 -0.0015 23 1 3.1308 1.4417 -0.0015 24 1 1.6765 1.9568 -0.8892 25 1 1.6790 1.9559 0.8908 26 1 1.6332 -0.2469 -2.1388 27 1 3.1299 -0.6777 -1.2756 28 1 1.9014 -2.6230 -2.0343 29 1 3.2085 -2.7779 -0.0005 30 1 1.7671 -3.8230 0.0323 31 1 3.2774 -2.5448 2.5077 32 1 1.9647 -3.7471 2.5154 33 1 0.3078 -0.5791 6.7679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158608849.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:00 Heat of formation + Delta-G solvation = -105.976907 kcal Electronic energy + Delta-G solvation = -15215.058054 eV Core-core repulsion = 12661.286390 eV Total energy + Delta-G solvation = -2553.771664 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.95837 -38.22916 -35.59105 -34.96389 -33.74424 -30.80112 -28.29043 -27.54234 -26.34112 -24.54413 -22.69468 -20.32008 -19.59093 -17.79526 -17.46170 -17.27577 -16.05379 -15.85829 -15.62153 -15.47362 -15.10102 -14.93337 -14.37642 -13.83796 -13.38331 -13.21871 -13.01563 -12.79295 -12.76664 -12.64759 -12.27330 -12.13996 -11.99668 -11.60830 -11.34760 -11.10250 -10.53445 -10.16603 -9.47707 -8.17033 -5.88152 1.38361 1.47588 1.54522 2.32416 2.73292 3.06396 3.15543 3.57047 3.81870 3.96108 4.03848 4.10475 4.26567 4.45461 4.49378 4.54354 4.63513 4.69044 4.69725 4.75315 4.87794 4.97342 5.00305 5.08695 5.21052 5.26848 5.40249 5.78535 6.20002 6.42803 6.44013 7.24302 8.05442 9.07857 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.046884 B = 0.007460 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.075093 B = 3752.612248 C = 4083.045631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.092 3.908 3 C -0.133 4.133 4 C 0.040 3.960 5 N -0.684 5.684 6 C 0.041 3.959 7 C 0.102 3.898 8 H 0.050 0.950 9 C 0.075 3.925 10 O -0.331 6.331 11 C -0.385 4.385 12 H 0.074 0.926 13 C -0.044 4.044 14 N -0.939 5.939 15 Si 1.010 2.990 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.260 1.260 19 O -0.396 6.396 20 H 0.033 0.967 21 H 0.090 0.910 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.045 0.955 26 H 0.113 0.887 27 H 0.039 0.961 28 H 0.363 0.637 29 H 0.043 0.957 30 H 0.103 0.897 31 H 0.026 0.974 32 H 0.055 0.945 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.217 -0.880 -15.523 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.052 3.948 3 C -0.191 4.191 4 C -0.089 4.089 5 N -0.318 5.318 6 C -0.088 4.088 7 C 0.044 3.956 8 H 0.068 0.932 9 C -0.003 4.003 10 O -0.247 6.247 11 C -0.464 4.464 12 H 0.092 0.908 13 C -0.237 4.237 14 N -0.583 5.583 15 Si 0.831 3.169 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.185 1.185 19 O -0.316 6.316 20 H 0.052 0.948 21 H 0.109 0.891 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.123 0.877 25 H 0.064 0.936 26 H 0.131 0.869 27 H 0.058 0.942 28 H 0.183 0.817 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.497 -0.410 -15.063 15.275 hybrid contribution 1.027 -0.511 0.634 1.311 sum 3.524 -0.920 -14.429 14.882 Atomic orbital electron populations 1.22199 0.95220 1.02406 1.01901 1.21936 0.94251 0.93557 0.85011 1.21751 1.01613 0.92524 1.03194 1.22581 0.98267 0.89443 0.98647 1.60414 1.63640 1.02936 1.04778 1.22356 0.97946 0.98948 0.89586 1.22019 0.98204 0.82086 0.93313 0.93216 1.22335 0.96091 0.95529 0.86344 1.85633 1.65777 1.61179 1.12102 1.21365 1.23702 1.18224 0.83059 0.90806 1.26325 0.97510 0.97142 1.02727 1.70229 1.31757 1.27320 1.29030 0.84776 0.78309 0.78353 0.75457 1.18921 1.20297 1.18480 1.88152 1.75317 1.23664 1.44443 0.94812 0.89098 0.92529 0.92078 0.87715 0.93551 0.86865 0.94232 0.81664 0.93895 0.87846 0.95560 0.92760 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.00 8.17 71.98 0.59 -4.41 16 2 C 0.09 2.89 1.11 -10.76 -0.01 2.88 16 3 C -0.13 -3.59 8.85 71.98 0.64 -2.96 16 4 C 0.04 0.94 5.46 86.31 0.47 1.41 16 5 N -0.68 -16.21 6.29 -513.00 -3.23 -19.43 16 6 C 0.04 1.19 6.05 86.31 0.52 1.72 16 7 C 0.10 4.16 2.69 30.63 0.08 4.24 16 8 H 0.05 2.21 6.50 -2.38 -0.02 2.19 16 9 C 0.07 3.57 5.68 71.98 0.41 3.98 16 10 O -0.33 -20.86 9.75 -77.43 -0.75 -21.61 16 11 C -0.38 -24.07 9.89 67.92 0.67 -23.40 16 12 H 0.07 4.23 7.77 -2.91 -0.02 4.21 16 13 C -0.04 -2.72 5.49 84.83 0.47 -2.26 16 14 N -0.94 -62.76 13.67 21.61 0.30 -62.46 16 15 Si 1.01 46.71 29.55 68.60 2.03 48.74 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 19 O -0.40 -17.20 9.89 -144.47 -1.43 -18.63 16 20 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.06 1.90 6.13 -2.39 -0.01 1.88 16 23 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 24 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.36 6.13 8.90 -89.69 -0.80 5.33 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.26 16.14 8.31 -92.70 -0.77 15.37 16 Total: -1.00 -78.93 271.03 1.03 -77.90 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.29 Total: 14.30 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 3.84 Total: -18.79 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -2.93 Total: -81.89 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -2.18 Total: -40.24 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -78.93 1.03 -77.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158608849.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.081 kcal (2) G-P(sol) polarization free energy of solvation -78.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds