Wall clock time and date at job start Mon Mar 30 2020 02:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81407 * 102.99888 * 2 1 4 4 C 1.52998 * 109.46859 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.46842 * 179.97438 * 4 3 2 6 6 C 1.46905 * 110.99724 * 189.99798 * 5 4 3 7 7 C 1.50701 * 109.46668 * 159.74538 * 6 5 4 8 8 H 1.08000 * 120.00178 * 354.08731 * 7 6 5 9 9 C 1.37878 * 119.99547 * 174.08201 * 7 6 5 10 10 N 1.31515 * 119.99765 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00176 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47122 * 89.99845 * 11 9 7 13 13 H 1.48500 * 109.47151 * 209.99652 * 11 9 7 14 14 H 1.48502 * 109.47161 * 329.99610 * 11 9 7 15 15 C 1.46895 * 110.99870 * 66.04808 * 5 4 3 16 16 C 1.53001 * 117.49620 * 262.86612 * 15 5 4 17 17 C 1.53006 * 117.49879 * 194.20952 * 15 5 4 18 18 H 1.09003 * 109.47149 * 300.00221 * 1 2 3 19 19 H 1.08995 * 109.46954 * 60.00298 * 1 2 3 20 20 H 1.09001 * 109.47046 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46977 * 60.00051 * 3 2 1 22 22 H 1.09002 * 109.46884 * 299.99987 * 3 2 1 23 23 H 1.09002 * 109.47342 * 299.99683 * 4 3 2 24 24 H 1.08996 * 109.47409 * 59.99817 * 4 3 2 25 25 H 1.08996 * 109.47129 * 279.74683 * 6 5 4 26 26 H 1.09003 * 109.46943 * 39.74610 * 6 5 4 27 27 H 0.97001 * 119.99919 * 180.02562 * 10 9 7 28 28 H 1.09000 * 115.55517 * 48.53667 * 15 5 4 29 29 H 1.08999 * 117.50031 * 0.02562 * 16 15 5 30 30 H 1.09003 * 117.50001 * 145.01890 * 16 15 5 31 31 H 1.08993 * 117.49791 * 214.97902 * 17 15 5 32 32 H 1.09005 * 117.49336 * 359.97304 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 7 4.0727 3.3714 -0.0013 6 6 5.5071 3.5804 -0.2400 7 6 5.7357 4.9893 -0.7235 8 1 4.8932 5.6318 -0.9329 9 6 7.0205 5.4582 -0.8983 10 7 7.2200 6.6876 -1.3207 11 14 8.4776 4.3468 -0.5365 12 1 8.8483 3.6007 -1.7658 13 1 9.6300 5.1708 -0.0912 14 1 8.1130 3.3856 0.5351 15 6 3.6491 4.0100 1.2520 16 6 2.3053 4.7415 1.2530 17 6 3.6113 5.5391 1.2881 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8031 2.2372 0.8900 22 1 1.8031 2.2371 -0.8900 23 1 4.1616 1.4703 0.8891 24 1 4.1608 1.4704 -0.8908 25 1 6.0568 3.4208 0.6875 26 1 5.8562 2.8760 -0.9951 27 1 8.1238 7.0173 -1.4440 28 1 3.9409 3.4921 2.1656 29 1 1.7354 4.7485 0.3239 30 1 1.7131 4.7051 2.1675 31 1 3.8779 6.0271 2.2255 32 1 3.9012 6.0712 0.3820 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158943084.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:57 Heat of formation + Delta-G solvation = 30.749593 kcal Electronic energy + Delta-G solvation = -12646.836222 eV Core-core repulsion = 10541.746334 eV Total energy + Delta-G solvation = -2105.089887 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.95224 -33.94729 -32.67815 -30.42140 -28.97939 -26.75195 -22.49388 -21.82576 -21.63407 -19.51503 -16.85530 -16.09283 -15.31065 -15.15595 -14.53411 -14.00959 -13.86236 -13.55167 -13.12413 -13.02868 -12.34783 -12.12036 -11.89233 -11.36747 -11.14865 -10.85111 -10.73157 -10.30073 -10.04354 -9.91587 -9.64008 -9.28133 -9.13611 -8.53830 -7.66050 -7.46845 -6.03793 -4.00030 1.71457 2.66106 3.28980 3.36548 3.38510 4.42527 4.47789 4.68912 5.05117 5.05913 5.17130 5.25225 5.29289 5.59207 5.59563 5.67824 5.82494 5.92090 6.04108 6.15322 6.24225 6.32720 6.68511 6.76695 6.92709 7.12252 7.62362 7.83155 8.02344 8.65991 9.05020 9.57798 11.08685 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.037933 B = 0.007672 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.970908 B = 3648.925590 C = 4155.337900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.280 6.280 3 C -0.069 4.069 4 C 0.073 3.927 5 N -0.498 5.498 6 C 0.163 3.837 7 C -0.501 4.501 8 H 0.086 0.914 9 C 0.068 3.932 10 N -0.901 5.901 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.017 3.983 16 C -0.186 4.186 17 C -0.148 4.148 18 H 0.074 0.926 19 H 0.075 0.925 20 H 0.097 0.903 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.032 0.968 24 H 0.078 0.922 25 H -0.005 1.005 26 H 0.023 0.977 27 H 0.263 0.737 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.843 -9.445 4.657 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.056 6.056 3 C -0.218 4.218 4 C -0.056 4.056 5 N -0.223 5.223 6 C 0.037 3.963 7 C -0.539 4.539 8 H 0.104 0.896 9 C -0.133 4.133 10 N -0.540 5.540 11 Si 0.698 3.302 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.092 4.092 16 C -0.224 4.224 17 C -0.185 4.185 18 H 0.093 0.907 19 H 0.094 0.906 20 H 0.116 0.884 21 H 0.102 0.898 22 H 0.106 0.894 23 H 0.050 0.950 24 H 0.096 0.904 25 H 0.013 0.987 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.271 -9.966 4.221 14.920 hybrid contribution 0.506 0.084 0.840 0.984 sum -9.764 -9.882 5.061 14.785 Atomic orbital electron populations 1.23309 0.94386 1.06038 1.04822 1.86769 1.07120 1.13543 1.98136 1.23441 1.01083 0.91682 1.05572 1.21725 0.91882 0.90848 1.01143 1.61760 1.20688 1.08698 1.31167 1.20223 0.82278 0.98676 0.95084 1.21072 0.93636 0.95941 1.43248 0.89585 1.24876 0.98516 0.94874 0.95034 1.69882 1.21460 1.15616 1.47067 0.86938 0.82965 0.81160 0.79152 1.20216 1.21241 1.19302 1.22118 1.00241 0.95368 0.91518 1.23049 0.91063 1.06632 1.01662 1.23169 0.98028 0.93185 1.04159 0.90705 0.90560 0.88441 0.89827 0.89439 0.94995 0.90370 0.98690 0.95930 0.92718 0.91193 0.89004 0.90214 0.90064 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.76 101.05 1.09 -0.03 16 2 S -0.28 -3.77 22.38 -107.50 -2.41 -6.18 16 3 C -0.07 -1.02 5.74 37.16 0.21 -0.80 16 4 C 0.07 1.28 4.95 -3.82 -0.02 1.27 16 5 N -0.50 -10.28 4.56 -228.07 -1.04 -11.32 16 6 C 0.16 3.93 3.87 -4.97 -0.02 3.91 16 7 C -0.50 -13.82 8.42 -34.44 -0.29 -14.11 16 8 H 0.09 2.55 6.04 -52.49 -0.32 2.24 16 9 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 10 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 11 Si 0.87 21.39 27.59 -169.99 -4.69 16.70 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.41 6.38 56.52 0.36 -6.05 16 15 C 0.02 0.32 4.20 -67.71 -0.28 0.03 16 16 C -0.19 -3.01 9.22 -26.69 -0.25 -3.25 16 17 C -0.15 -2.85 9.48 -26.69 -0.25 -3.10 16 18 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 19 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 20 H 0.10 0.79 8.14 -51.92 -0.42 0.36 16 21 H 0.08 1.19 6.56 -51.92 -0.34 0.85 16 22 H 0.09 1.30 8.14 -51.92 -0.42 0.88 16 23 H 0.03 0.56 8.12 -51.93 -0.42 0.14 16 24 H 0.08 1.39 7.82 -51.93 -0.41 0.99 16 25 H 0.00 -0.12 6.63 -51.93 -0.34 -0.46 16 26 H 0.02 0.55 7.44 -51.93 -0.39 0.16 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.12 2.81 5.52 -51.93 -0.29 2.52 16 LS Contribution 272.76 15.07 4.11 4.11 Total: -1.00 -29.14 272.76 -8.22 -37.36 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.06 Total: -0.06 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 0.09 Total: -14.24 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.27 Total: -37.69 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.69 Total: 16.70 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -2.41 Total: -6.18 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.14 -8.22 -37.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158943084.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.109 kcal (2) G-P(sol) polarization free energy of solvation -29.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds