Wall clock time and date at job start Mon Mar 30 2020 02:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81407 * 102.99888 * 2 1 4 4 C 1.52998 * 109.46859 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.46842 * 179.97438 * 4 3 2 6 6 C 1.46905 * 110.99724 * 189.99798 * 5 4 3 7 7 C 1.50701 * 109.46668 * 159.74538 * 6 5 4 8 8 H 1.08000 * 120.00178 * 354.08731 * 7 6 5 9 9 C 1.37878 * 119.99547 * 174.08201 * 7 6 5 10 10 N 1.31515 * 119.99765 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00176 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47122 * 89.99845 * 11 9 7 13 13 H 1.48500 * 109.47151 * 209.99652 * 11 9 7 14 14 H 1.48502 * 109.47161 * 329.99610 * 11 9 7 15 15 C 1.46895 * 110.99870 * 66.04808 * 5 4 3 16 16 C 1.53001 * 117.49620 * 262.86612 * 15 5 4 17 17 C 1.53006 * 117.49879 * 194.20952 * 15 5 4 18 18 H 1.09003 * 109.47149 * 300.00221 * 1 2 3 19 19 H 1.08995 * 109.46954 * 60.00298 * 1 2 3 20 20 H 1.09001 * 109.47046 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46977 * 60.00051 * 3 2 1 22 22 H 1.09002 * 109.46884 * 299.99987 * 3 2 1 23 23 H 1.09002 * 109.47342 * 299.99683 * 4 3 2 24 24 H 1.08996 * 109.47409 * 59.99817 * 4 3 2 25 25 H 1.08996 * 109.47129 * 279.74683 * 6 5 4 26 26 H 1.09003 * 109.46943 * 39.74610 * 6 5 4 27 27 H 0.97001 * 119.99919 * 180.02562 * 10 9 7 28 28 H 1.09000 * 115.55517 * 48.53667 * 15 5 4 29 29 H 1.08999 * 117.50031 * 0.02562 * 16 15 5 30 30 H 1.09003 * 117.50001 * 145.01890 * 16 15 5 31 31 H 1.08993 * 117.49791 * 214.97902 * 17 15 5 32 32 H 1.09005 * 117.49336 * 359.97304 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 7 4.0727 3.3714 -0.0013 6 6 5.5071 3.5804 -0.2400 7 6 5.7357 4.9893 -0.7235 8 1 4.8932 5.6318 -0.9329 9 6 7.0205 5.4582 -0.8983 10 7 7.2200 6.6876 -1.3207 11 14 8.4776 4.3468 -0.5365 12 1 8.8483 3.6007 -1.7658 13 1 9.6300 5.1708 -0.0912 14 1 8.1130 3.3856 0.5351 15 6 3.6491 4.0100 1.2520 16 6 2.3053 4.7415 1.2530 17 6 3.6113 5.5391 1.2881 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8031 2.2372 0.8900 22 1 1.8031 2.2371 -0.8900 23 1 4.1616 1.4703 0.8891 24 1 4.1608 1.4704 -0.8908 25 1 6.0568 3.4208 0.6875 26 1 5.8562 2.8760 -0.9951 27 1 8.1238 7.0173 -1.4440 28 1 3.9409 3.4921 2.1656 29 1 1.7354 4.7485 0.3239 30 1 1.7131 4.7051 2.1675 31 1 3.8779 6.0271 2.2255 32 1 3.9012 6.0712 0.3820 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158943084.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:57 Heat of formation + Delta-G solvation = 12.299438 kcal Electronic energy + Delta-G solvation = -12647.636280 eV Core-core repulsion = 10541.746334 eV Total energy + Delta-G solvation = -2105.889946 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.49634 -35.48522 -34.70574 -32.05351 -29.77771 -28.56484 -23.91870 -23.70319 -23.07558 -21.09818 -18.92327 -17.24926 -16.88829 -16.54407 -16.23875 -15.61791 -15.12899 -14.74331 -14.48399 -14.08887 -14.01716 -13.86049 -13.20555 -13.02163 -12.63465 -12.49181 -12.29463 -12.02624 -11.86228 -11.33738 -11.12100 -10.91144 -10.77226 -10.68474 -9.11560 -8.67739 -8.23035 -6.23731 0.71197 1.34587 1.35802 1.45018 1.69745 2.36039 2.97392 3.09101 3.21559 3.89138 3.98694 4.16847 4.22498 4.37084 4.39101 4.48221 4.52249 4.63470 4.79381 4.86613 4.90776 4.91780 4.94434 5.07062 5.29064 5.49548 5.60872 5.97932 6.40834 6.61965 6.82676 7.37840 8.92499 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.037933 B = 0.007672 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.970908 B = 3648.925590 C = 4155.337900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 S -0.312 6.312 3 C -0.056 4.056 4 C 0.076 3.924 5 N -0.512 5.512 6 C 0.171 3.829 7 C -0.498 4.498 8 H 0.052 0.948 9 C 0.011 3.989 10 N -0.947 5.947 11 Si 0.936 3.064 12 H -0.268 1.268 13 H -0.284 1.284 14 H -0.255 1.255 15 C 0.003 3.997 16 C -0.145 4.145 17 C -0.171 4.171 18 H 0.087 0.913 19 H 0.084 0.916 20 H 0.115 0.885 21 H 0.091 0.909 22 H 0.083 0.917 23 H 0.034 0.966 24 H 0.070 0.930 25 H -0.009 1.009 26 H 0.023 0.977 27 H 0.264 0.736 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.085 -11.344 5.798 17.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 S -0.088 6.088 3 C -0.205 4.205 4 C -0.053 4.053 5 N -0.237 5.237 6 C 0.044 3.956 7 C -0.537 4.537 8 H 0.070 0.930 9 C -0.186 4.186 10 N -0.589 5.589 11 Si 0.760 3.240 12 H -0.193 1.193 13 H -0.209 1.209 14 H -0.179 1.179 15 C -0.106 4.106 16 C -0.183 4.183 17 C -0.209 4.209 18 H 0.106 0.894 19 H 0.103 0.897 20 H 0.134 0.866 21 H 0.110 0.890 22 H 0.101 0.899 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.009 0.991 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.539 -11.882 5.365 17.410 hybrid contribution 0.755 0.681 0.469 1.120 sum -10.783 -11.201 5.834 16.606 Atomic orbital electron populations 1.23412 0.90464 1.07579 1.05887 1.86887 1.11417 1.12302 1.98233 1.23196 0.98731 0.92815 1.05716 1.21722 0.94095 0.88639 1.00840 1.61649 1.18310 1.11031 1.32710 1.19978 0.84831 0.96213 0.94537 1.21284 0.92746 0.97303 1.42343 0.92959 1.25705 1.01614 0.96231 0.95092 1.70029 1.22179 1.17684 1.48962 0.85887 0.79181 0.79376 0.79523 1.19348 1.20935 1.17930 1.22260 1.02575 0.94637 0.91120 1.23085 0.89647 1.02198 1.03336 1.23008 1.01573 0.93513 1.02783 0.89422 0.89725 0.86631 0.88997 0.89852 0.94775 0.91147 0.99108 0.95857 0.92657 0.90097 0.89076 0.86459 0.88833 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.76 113.37 1.22 -0.43 16 2 S -0.31 -7.71 22.38 -56.49 -1.26 -8.97 16 3 C -0.06 -1.53 5.74 71.98 0.41 -1.12 16 4 C 0.08 2.56 4.95 86.30 0.43 2.99 16 5 N -0.51 -20.87 4.56 -875.49 -4.00 -24.86 16 6 C 0.17 8.23 3.87 85.56 0.33 8.56 16 7 C -0.50 -28.25 8.42 25.60 0.22 -28.04 16 8 H 0.05 3.27 6.04 -2.91 -0.02 3.25 16 9 C 0.01 0.61 5.47 84.65 0.46 1.07 16 10 N -0.95 -58.80 13.96 21.45 0.30 -58.50 16 11 Si 0.94 44.33 27.59 68.60 1.89 46.22 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 14 H -0.26 -11.45 6.38 99.48 0.63 -10.82 16 15 C 0.00 0.11 4.20 44.92 0.19 0.29 16 16 C -0.15 -4.34 9.22 30.62 0.28 -4.06 16 17 C -0.17 -6.58 9.48 30.62 0.29 -6.29 16 18 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 19 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 20 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.09 2.33 6.56 -2.39 -0.02 2.32 16 22 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.03 1.14 8.12 -2.39 -0.02 1.12 16 24 H 0.07 2.46 7.82 -2.39 -0.02 2.44 16 25 H -0.01 -0.43 6.63 -2.39 -0.02 -0.45 16 26 H 0.02 1.12 7.44 -2.39 -0.02 1.10 16 27 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 29 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 30 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.08 3.85 5.52 -2.38 -0.01 3.83 16 Total: -1.00 -64.01 272.76 1.77 -62.24 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.00 Total: 10.89 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 3.83 Total: -27.02 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -3.70 Total: -83.36 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.89 Total: 46.22 kcal Atomic # 16 Polarization: -7.71 SS G_CDS: -1.26 Total: -8.97 kcal Total: -64.01 1.77 -62.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158943084.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.540 kcal (2) G-P(sol) polarization free energy of solvation -64.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds