Wall clock time and date at job start Mon Mar 30 2020 03:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46833 * 2 1 4 4 C 1.50700 * 109.47148 * 240.00183 * 2 1 3 5 5 H 1.08004 * 120.00420 * 239.99635 * 4 2 1 6 6 C 1.37885 * 120.00009 * 59.99784 * 4 2 1 7 7 N 1.31520 * 119.99788 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00069 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47280 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47489 * 119.99821 * 8 6 4 11 11 H 1.48506 * 109.47088 * 239.99977 * 8 6 4 12 12 N 1.46892 * 109.47416 * 120.00373 * 2 1 3 13 13 C 1.47013 * 111.00221 * 62.82603 * 12 2 1 14 14 C 1.53104 * 109.25692 * 182.39424 * 13 12 2 15 15 O 1.43012 * 109.25672 * 303.15320 * 14 13 12 16 16 C 1.43011 * 113.74199 * 58.67203 * 15 14 13 17 17 C 1.47011 * 111.00200 * 186.46607 * 12 2 1 18 18 H 1.09010 * 109.54052 * 297.55991 * 17 12 2 19 19 C 1.52999 * 109.50782 * 57.66696 * 17 12 2 20 20 O 1.42900 * 109.47100 * 63.46259 * 19 17 12 21 21 H 1.08999 * 109.47188 * 292.67784 * 1 2 3 22 22 H 1.08993 * 109.47027 * 52.68235 * 1 2 3 23 23 H 1.09008 * 109.46514 * 172.68240 * 1 2 3 24 24 H 0.97003 * 119.99640 * 180.02562 * 7 6 4 25 25 H 1.08997 * 109.50834 * 62.45882 * 13 12 2 26 26 H 1.08997 * 109.54393 * 302.34872 * 13 12 2 27 27 H 1.09001 * 109.50249 * 183.21430 * 14 13 12 28 28 H 1.09003 * 109.54394 * 63.10881 * 14 13 12 29 29 H 1.08999 * 109.50814 * 181.39433 * 16 15 14 30 30 H 1.09004 * 109.54400 * 61.28350 * 16 15 14 31 31 H 1.09001 * 109.47189 * 303.45786 * 19 17 12 32 32 H 1.09007 * 109.46900 * 183.46146 * 19 17 12 33 33 H 0.96701 * 114.00151 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 3.1465 -2.2869 -3.6039 10 1 1.1661 -1.5866 -4.8162 11 1 3.1465 -0.1871 -4.8166 12 7 2.0198 -0.6925 1.1993 13 6 1.6045 -2.1028 1.1999 14 6 2.0835 -2.7697 2.4921 15 8 3.5019 -2.6228 2.6009 16 6 3.9413 -1.2619 2.6041 17 6 3.4811 -0.5797 1.3131 18 1 3.9519 -1.0643 0.4576 19 6 3.8785 0.8974 1.3460 20 8 3.3294 1.5124 2.5132 21 1 -0.3633 0.3962 0.9482 22 1 -0.3633 0.6230 -0.8172 23 1 -0.3633 -1.0194 -0.1309 24 1 0.7080 1.1609 -3.4844 25 1 2.0446 -2.6122 0.3426 26 1 0.5178 -2.1629 1.1405 27 1 1.8277 -3.8290 2.4714 28 1 1.6019 -2.2956 3.3474 29 1 5.0292 -1.2308 2.6643 30 1 3.5143 -0.7428 3.4622 31 1 3.4940 1.3970 0.4569 32 1 4.9652 0.9808 1.3684 33 1 3.5414 2.4520 2.5993 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159086035.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:16 Heat of formation + Delta-G solvation = -85.576978 kcal Electronic energy + Delta-G solvation = -15799.079417 eV Core-core repulsion = 13246.192360 eV Total energy + Delta-G solvation = -2552.887057 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.17457 -36.31601 -35.40321 -32.54218 -31.07403 -29.34605 -26.06425 -25.49755 -24.95002 -21.82033 -20.52877 -19.03216 -16.90061 -16.23134 -15.95047 -15.46720 -14.63905 -14.44745 -14.39618 -13.35400 -13.13250 -13.08942 -12.60976 -12.28863 -11.52012 -11.28064 -11.09580 -10.81867 -10.75351 -10.66198 -10.36274 -10.20480 -9.78472 -9.60873 -9.51039 -9.23953 -8.74430 -8.39092 -7.13167 -6.02991 -4.15667 3.22691 3.31740 3.35726 4.36489 4.37317 4.80703 4.94807 5.22378 5.49424 5.65392 5.71587 5.82101 5.91828 5.97619 6.04136 6.23678 6.40100 6.49568 6.69859 6.81635 6.92248 7.05916 7.19447 7.53511 7.65183 7.69140 7.93537 8.11590 8.14765 8.29738 8.40801 8.94790 9.52267 10.97239 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.030304 B = 0.011297 C = 0.010431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.754442 B = 2477.881994 C = 2683.592322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.203 3.797 3 H 0.045 0.955 4 C -0.545 4.545 5 H 0.056 0.944 6 C 0.069 3.931 7 N -0.886 5.886 8 Si 0.886 3.114 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.520 5.520 13 C 0.024 3.976 14 C 0.063 3.937 15 O -0.395 6.395 16 C 0.072 3.928 17 C 0.059 3.941 18 H 0.063 0.937 19 C 0.085 3.915 20 O -0.560 6.560 21 H 0.016 0.984 22 H 0.079 0.921 23 H 0.026 0.974 24 H 0.260 0.740 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.035 0.965 33 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.792 -1.151 7.144 8.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.097 3.903 3 H 0.062 0.938 4 C -0.584 4.584 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.714 3.286 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.245 5.245 13 C -0.105 4.105 14 C -0.014 4.014 15 O -0.314 6.314 16 C -0.005 4.005 17 C -0.051 4.051 18 H 0.080 0.920 19 C 0.007 3.993 20 O -0.363 6.363 21 H 0.035 0.965 22 H 0.097 0.903 23 H 0.045 0.955 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.389 -1.574 7.524 8.400 hybrid contribution 0.686 -0.056 -1.996 2.111 sum 4.075 -1.629 5.528 7.058 Atomic orbital electron populations 1.21742 0.97690 0.99860 0.99148 1.19365 0.92397 0.94406 0.84097 0.93756 1.21773 1.31927 1.12922 0.91751 0.92559 1.24906 0.94797 0.94813 0.98850 1.69916 1.36392 1.22770 1.23353 0.86630 0.78735 0.79826 0.83379 1.19891 1.20963 1.21018 1.62742 1.08238 1.11340 1.42208 1.22592 1.01055 0.90577 0.96255 1.22710 0.81148 0.99896 0.97652 1.87863 1.22683 1.26238 1.94644 1.22598 0.98340 0.81914 0.97621 1.22105 0.91727 0.93912 0.97329 0.91974 1.22223 0.94945 0.93611 0.88552 1.86571 1.78450 1.26606 1.44693 0.96511 0.90264 0.95473 0.92965 0.93473 0.90363 0.89719 0.93211 0.90026 0.92026 0.91709 0.94653 0.78964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.49 37.16 0.32 -2.77 16 2 C 0.20 5.04 2.07 -68.87 -0.14 4.90 16 3 H 0.04 1.19 5.85 -51.93 -0.30 0.89 16 4 C -0.54 -14.47 7.11 -34.44 -0.24 -14.72 16 5 H 0.06 1.53 5.79 -52.48 -0.30 1.23 16 6 C 0.07 1.86 5.30 -17.81 -0.09 1.77 16 7 N -0.89 -24.70 11.41 55.43 0.63 -24.06 16 8 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.52 -11.39 4.44 -219.79 -0.98 -12.37 16 13 C 0.02 0.49 4.99 -3.71 -0.02 0.47 16 14 C 0.06 1.10 7.01 37.21 0.26 1.36 16 15 O -0.40 -7.46 10.83 -35.23 -0.38 -7.84 16 16 C 0.07 1.29 6.16 37.21 0.23 1.52 16 17 C 0.06 1.18 2.11 -67.60 -0.14 1.03 16 18 H 0.06 1.37 6.96 -51.92 -0.36 1.01 16 19 C 0.08 1.52 6.37 37.16 0.24 1.76 16 20 O -0.56 -9.50 12.71 -35.23 -0.45 -9.94 16 21 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.08 2.09 6.30 -51.93 -0.33 1.77 16 23 H 0.03 0.64 6.79 -51.92 -0.35 0.29 16 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.05 1.06 6.39 -51.93 -0.33 0.72 16 26 H 0.08 1.58 6.43 -51.93 -0.33 1.25 16 27 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.12 7.49 -51.93 -0.39 0.73 16 31 H 0.06 1.31 6.05 -51.93 -0.31 1.00 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.37 4.39 9.12 45.56 0.42 4.81 16 LS Contribution 256.06 15.07 3.86 3.86 Total: -1.00 -29.52 256.06 -5.79 -35.31 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -3.85 Total: 3.72 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 0.40 Total: -4.68 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.34 Total: -36.43 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.83 Total: -17.78 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.52 -5.79 -35.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159086035.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.272 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds