Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86791 * 120.00350 * 2 1 4 4 H 1.48500 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47076 * 299.99732 * 3 2 1 6 6 H 1.48507 * 109.47150 * 59.99829 * 3 2 1 7 7 C 1.37883 * 119.99362 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99288 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00515 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47300 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46991 * 180.02562 * 10 9 7 12 12 C 1.42899 * 113.99675 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46916 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.50212 * 305.08279 * 13 12 11 15 15 C 1.53103 * 109.50605 * 184.99747 * 13 12 11 16 16 N 1.47015 * 109.25538 * 183.16831 * 15 13 12 17 17 C 1.47016 * 110.75076 * 58.61911 * 16 15 13 18 18 C 1.53103 * 109.29298 * 301.35892 * 17 16 15 19 19 O 1.43016 * 109.54422 * 65.19249 * 13 12 11 20 20 H 0.96998 * 119.99536 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46993 * 59.99081 * 9 7 2 22 22 H 1.09000 * 109.46751 * 299.99614 * 9 7 2 23 23 H 1.08995 * 109.47183 * 60.00033 * 10 9 7 24 24 H 1.09000 * 109.46987 * 299.99572 * 10 9 7 25 25 H 1.08995 * 109.47607 * 59.99827 * 12 11 10 26 26 H 1.09004 * 109.47112 * 299.99316 * 12 11 10 27 27 H 1.08998 * 109.50706 * 63.23533 * 15 13 12 28 28 H 1.08997 * 109.53776 * 303.12374 * 15 13 12 29 29 H 1.00891 * 111.00210 * 294.83819 * 16 15 13 30 30 H 1.09002 * 109.50934 * 61.31617 * 17 16 15 31 31 H 1.09003 * 109.50733 * 181.40211 * 17 16 15 32 32 H 1.09004 * 109.50456 * 176.81005 * 18 17 16 33 33 H 1.09008 * 109.50567 * 296.93791 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 8 1.5305 -4.8997 -0.0001 12 6 2.3704 -6.0558 0.0005 13 6 1.5031 -7.3163 -0.0009 14 1 0.8094 -7.2816 0.8391 15 6 2.3976 -8.5524 0.1254 16 7 1.5662 -9.7624 0.0472 17 6 0.8250 -9.8040 -1.2218 18 6 -0.0543 -8.5559 -1.3352 19 8 0.7674 -7.3895 -1.2251 20 1 -0.4849 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8718 -3.6045 0.8905 24 1 2.8717 -3.6045 -0.8895 25 1 2.9991 -6.0478 0.8908 26 1 3.0003 -6.0477 -0.8891 27 1 2.9174 -8.5293 1.0832 28 1 3.1269 -8.5589 -0.6846 29 1 0.9384 -9.8213 0.8347 30 1 1.5288 -9.8302 -2.0538 31 1 0.1976 -10.6949 -1.2478 32 1 -0.5623 -8.5549 -2.2996 33 1 -0.7933 -8.5573 -0.5338 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168763519.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = -100.905063 kcal Electronic energy + Delta-G solvation = -14384.286829 eV Core-core repulsion = 11830.735096 eV Total energy + Delta-G solvation = -2553.551733 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.71649 -37.13954 -34.58086 -33.30575 -32.12971 -29.81916 -27.45458 -25.07712 -24.18472 -22.51411 -21.26127 -20.66639 -16.79250 -16.62903 -16.51566 -15.76882 -15.14410 -15.08734 -14.82894 -14.55578 -14.35386 -13.03460 -12.88602 -12.41480 -12.19010 -12.15417 -11.55657 -11.33014 -11.20800 -11.00406 -10.70660 -10.47271 -10.31630 -10.08532 -9.49459 -9.16686 -8.89403 -8.46895 -8.34558 -6.01632 -4.05197 3.31025 3.37812 3.41964 3.66904 3.89620 4.13051 4.46642 4.68484 4.85722 4.97474 5.01095 5.14115 5.34401 5.35331 5.39246 5.49551 5.63479 5.66155 5.76545 5.92905 6.27426 6.31499 6.54354 6.90810 6.98105 7.13946 7.56588 7.81733 7.84294 8.13224 8.37934 9.01718 9.58385 11.10163 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.080263 B = 0.004742 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.771042 B = 5903.559852 C = 6119.814275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.069 3.931 11 O -0.385 6.385 12 C 0.072 3.928 13 C 0.056 3.944 14 H 0.065 0.935 15 C 0.028 3.972 16 N -0.682 5.682 17 C 0.018 3.982 18 C 0.020 3.980 19 O -0.363 6.363 20 H 0.261 0.739 21 H 0.025 0.975 22 H 0.023 0.977 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.341 0.659 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.810 -18.093 -0.119 18.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.007 4.007 11 O -0.305 6.305 12 C -0.006 4.006 13 C -0.004 4.004 14 H 0.083 0.917 15 C -0.102 4.102 16 N -0.311 5.311 17 C -0.111 4.111 18 C -0.059 4.059 19 O -0.281 6.281 20 H 0.071 0.929 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.159 0.841 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.998 -18.259 -0.492 18.510 hybrid contribution -0.054 1.451 0.333 1.490 sum 2.943 -16.808 -0.159 17.065 Atomic orbital electron populations 1.70002 1.06090 1.26623 1.50286 1.25007 0.94879 0.99316 0.95144 0.86463 0.79999 0.83460 0.77637 1.19693 1.20901 1.20922 1.21102 0.93045 0.90566 1.51425 0.92484 1.19069 0.94269 0.89443 0.98460 1.22889 0.96409 0.83234 0.98168 1.87983 1.33595 1.13619 1.95254 1.22269 0.92511 0.85533 1.00320 1.22864 0.94298 0.95159 0.88084 0.91722 1.22632 0.96278 0.87373 1.03942 1.60921 1.27284 1.38247 1.04605 1.22708 0.97334 0.97800 0.93286 1.23291 0.93134 0.86509 1.02942 1.88224 1.60232 1.41756 1.37935 0.92920 0.95681 0.95811 0.94736 0.94635 0.92374 0.93083 0.89306 0.89648 0.84127 0.89858 0.89670 0.88308 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 2 C 0.06 1.70 5.46 -17.81 -0.10 1.61 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.69 5.34 -27.89 -0.15 0.54 16 10 C 0.07 1.57 5.88 37.16 0.22 1.78 16 11 O -0.39 -8.29 10.31 -39.68 -0.41 -8.70 16 12 C 0.07 1.14 5.61 37.16 0.21 1.35 16 13 C 0.06 0.77 3.08 -26.68 -0.08 0.69 16 14 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 15 C 0.03 0.29 6.05 -3.71 -0.02 0.27 16 16 N -0.68 -6.62 6.93 -113.49 -0.79 -7.40 16 17 C 0.02 0.17 6.76 -3.71 -0.03 0.14 16 18 C 0.02 0.22 7.01 37.21 0.26 0.48 16 19 O -0.36 -5.70 10.44 -39.68 -0.41 -6.11 16 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.34 2.87 8.89 -39.30 -0.35 2.52 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 LS Contribution 276.91 15.07 4.17 4.17 Total: -1.00 -32.86 276.91 -7.11 -39.97 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -5.39 Total: -3.39 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 0.00 Total: -8.68 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: -0.05 Total: -34.07 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.82 Total: -14.81 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -32.86 -7.11 -39.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168763519.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.940 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds