Wall clock time and date at job start Mon Mar 30 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86791 * 120.00350 * 2 1 4 4 H 1.48500 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47076 * 299.99732 * 3 2 1 6 6 H 1.48507 * 109.47150 * 59.99829 * 3 2 1 7 7 C 1.37883 * 119.99362 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99288 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00515 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47300 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46991 * 180.02562 * 10 9 7 12 12 C 1.42899 * 113.99675 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46916 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.50212 * 305.08279 * 13 12 11 15 15 C 1.53103 * 109.50605 * 184.99747 * 13 12 11 16 16 N 1.47015 * 109.25538 * 183.16831 * 15 13 12 17 17 C 1.47016 * 110.75076 * 58.61911 * 16 15 13 18 18 C 1.53103 * 109.29298 * 301.35892 * 17 16 15 19 19 O 1.43016 * 109.54422 * 65.19249 * 13 12 11 20 20 H 0.96998 * 119.99536 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46993 * 59.99081 * 9 7 2 22 22 H 1.09000 * 109.46751 * 299.99614 * 9 7 2 23 23 H 1.08995 * 109.47183 * 60.00033 * 10 9 7 24 24 H 1.09000 * 109.46987 * 299.99572 * 10 9 7 25 25 H 1.08995 * 109.47607 * 59.99827 * 12 11 10 26 26 H 1.09004 * 109.47112 * 299.99316 * 12 11 10 27 27 H 1.08998 * 109.50706 * 63.23533 * 15 13 12 28 28 H 1.08997 * 109.53776 * 303.12374 * 15 13 12 29 29 H 1.00891 * 111.00210 * 294.83819 * 16 15 13 30 30 H 1.09002 * 109.50934 * 61.31617 * 17 16 15 31 31 H 1.09003 * 109.50733 * 181.40211 * 17 16 15 32 32 H 1.09004 * 109.50456 * 176.81005 * 18 17 16 33 33 H 1.09008 * 109.50567 * 296.93791 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 8 1.5305 -4.8997 -0.0001 12 6 2.3704 -6.0558 0.0005 13 6 1.5031 -7.3163 -0.0009 14 1 0.8094 -7.2816 0.8391 15 6 2.3976 -8.5524 0.1254 16 7 1.5662 -9.7624 0.0472 17 6 0.8250 -9.8040 -1.2218 18 6 -0.0543 -8.5559 -1.3352 19 8 0.7674 -7.3895 -1.2251 20 1 -0.4849 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8903 23 1 2.8718 -3.6045 0.8905 24 1 2.8717 -3.6045 -0.8895 25 1 2.9991 -6.0478 0.8908 26 1 3.0003 -6.0477 -0.8891 27 1 2.9174 -8.5293 1.0832 28 1 3.1269 -8.5589 -0.6846 29 1 0.9384 -9.8213 0.8347 30 1 1.5288 -9.8302 -2.0538 31 1 0.1976 -10.6949 -1.2478 32 1 -0.5623 -8.5549 -2.2996 33 1 -0.7933 -8.5573 -0.5338 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168763519.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:23 Heat of formation + Delta-G solvation = -126.384165 kcal Electronic energy + Delta-G solvation = -14385.391685 eV Core-core repulsion = 11830.735096 eV Total energy + Delta-G solvation = -2554.656589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.70833 -38.72056 -35.53301 -35.38434 -33.35949 -31.74365 -28.57870 -26.70677 -25.55761 -23.55569 -22.91970 -21.98958 -18.75260 -17.79976 -17.46873 -17.26483 -16.63654 -16.44349 -16.12954 -15.95988 -15.60362 -14.46550 -14.27440 -14.19467 -13.58991 -13.34255 -12.91461 -12.82564 -12.44507 -12.34893 -12.19927 -12.11345 -12.03336 -11.50233 -11.36764 -11.15482 -10.68812 -10.44950 -9.33146 -8.24964 -6.38761 1.40738 1.42314 1.55952 2.36539 2.68633 2.78115 3.08862 3.19305 3.77308 3.96043 3.98093 4.13192 4.21034 4.35760 4.35946 4.44980 4.46349 4.51018 4.66023 4.77251 4.89755 4.90976 5.00835 5.34521 5.54571 5.70739 5.75736 6.08451 6.16036 6.28477 6.41637 6.77473 7.31395 8.88639 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.080263 B = 0.004742 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.771042 B = 5903.559852 C = 6119.814275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.978 3.022 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.070 0.930 9 C 0.027 3.973 10 C 0.085 3.915 11 O -0.414 6.414 12 C 0.062 3.938 13 C 0.056 3.944 14 H 0.058 0.942 15 C 0.039 3.961 16 N -0.681 5.681 17 C 0.025 3.975 18 C 0.013 3.987 19 O -0.403 6.403 20 H 0.266 0.734 21 H -0.011 1.011 22 H -0.006 1.006 23 H 0.052 0.948 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.109 0.891 28 H 0.084 0.916 29 H 0.350 0.650 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.398 -18.710 0.207 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.088 0.912 9 C -0.011 4.011 10 C 0.009 3.991 11 O -0.334 6.334 12 C -0.015 4.015 13 C -0.004 4.004 14 H 0.076 0.924 15 C -0.092 4.092 16 N -0.310 5.310 17 C -0.104 4.104 18 C -0.065 4.065 19 O -0.322 6.322 20 H 0.075 0.925 21 H 0.007 0.993 22 H 0.012 0.988 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.127 0.873 28 H 0.102 0.898 29 H 0.168 0.832 30 H 0.098 0.902 31 H 0.129 0.871 32 H 0.125 0.875 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.591 -18.914 -0.160 19.464 hybrid contribution -0.626 1.549 0.216 1.684 sum 3.965 -17.365 0.056 17.812 Atomic orbital electron populations 1.70149 1.08162 1.28070 1.50970 1.26098 0.95833 1.03831 0.94196 0.85208 0.79027 0.77727 0.77889 1.18071 1.20259 1.20107 1.21512 0.93807 0.91333 1.51704 0.91215 1.18945 0.94684 0.92150 0.95273 1.22490 0.94752 0.82575 0.99299 1.87927 1.35403 1.14535 1.95513 1.22646 0.92846 0.84192 1.01786 1.22944 0.94510 0.95563 0.87345 0.92400 1.22572 0.95672 0.85928 1.04995 1.60956 1.27626 1.37213 1.05187 1.22704 0.97154 0.97620 0.92971 1.23525 0.93209 0.86156 1.03580 1.88157 1.61196 1.44108 1.38775 0.92525 0.99263 0.98793 0.92977 0.93863 0.89638 0.92694 0.87283 0.89760 0.83166 0.90246 0.87113 0.87493 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.60 13.29 21.45 0.28 -58.32 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.98 44.53 29.54 68.60 2.03 46.56 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.55 -32.03 9.11 25.60 0.23 -31.79 16 8 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.03 1.54 5.34 29.85 0.16 1.70 16 10 C 0.08 3.88 5.88 71.98 0.42 4.30 16 11 O -0.41 -17.98 10.31 -144.72 -1.49 -19.48 16 12 C 0.06 1.93 5.61 71.98 0.40 2.33 16 13 C 0.06 1.50 3.08 30.63 0.09 1.60 16 14 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 15 C 0.04 0.73 6.05 86.32 0.52 1.26 16 16 N -0.68 -11.61 6.93 -512.97 -3.55 -15.16 16 17 C 0.03 0.41 6.76 86.32 0.58 0.99 16 18 C 0.01 0.28 7.01 72.02 0.51 0.79 16 19 O -0.40 -12.60 10.44 -144.72 -1.51 -14.11 16 20 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 21 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 22 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 23 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.35 5.05 8.89 -89.70 -0.80 4.25 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -71.74 276.91 -0.58 -72.32 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.28 Total: 6.65 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 3.39 Total: -18.46 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -3.27 Total: -73.48 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -3.00 Total: -33.59 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -71.74 -0.58 -72.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168763519.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.064 kcal (2) G-P(sol) polarization free energy of solvation -71.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds