Wall clock time and date at job start Mon Mar 30 2020 02:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99684 * 2 1 4 4 H 1.48500 * 109.47492 * 270.00148 * 3 2 1 5 5 H 1.48505 * 109.47309 * 30.00540 * 3 2 1 6 6 H 1.48505 * 109.46823 * 150.00367 * 3 2 1 7 7 C 1.37877 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99836 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99987 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00001 * 185.62141 * 10 9 7 12 12 C 1.53003 * 109.54416 * 63.36783 * 11 10 9 13 13 O 1.42900 * 109.46748 * 54.17722 * 12 11 10 14 14 C 1.53179 * 109.61620 * 183.58964 * 11 10 9 15 15 C 1.53098 * 109.16638 * 62.93390 * 14 11 10 16 16 O 1.42901 * 109.41321 * 57.60217 * 15 14 11 17 17 C 1.42898 * 114.10365 * 298.84472 * 16 15 14 18 18 C 1.53095 * 109.41282 * 61.16175 * 17 16 15 19 19 H 0.97005 * 120.00055 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.47280 * 59.99737 * 9 7 2 21 21 H 1.09002 * 109.47106 * 299.99850 * 9 7 2 22 22 H 1.00893 * 111.00156 * 309.57544 * 10 9 7 23 23 H 1.08997 * 109.47013 * 294.17894 * 12 11 10 24 24 H 1.09002 * 109.47124 * 174.17860 * 12 11 10 25 25 H 0.96702 * 113.99555 * 180.02562 * 13 12 11 26 26 H 1.09006 * 109.52306 * 182.83447 * 14 11 10 27 27 H 1.08998 * 109.52707 * 303.02435 * 14 11 10 28 28 H 1.09004 * 109.47467 * 297.62362 * 15 14 11 29 29 H 1.08993 * 109.49287 * 177.60004 * 15 14 11 30 30 H 1.08994 * 109.48073 * 301.18183 * 17 16 15 31 31 H 1.08998 * 109.49395 * 181.14375 * 17 16 15 32 32 H 1.09002 * 109.52367 * 182.49202 * 18 17 16 33 33 H 1.08998 * 109.57847 * 62.32367 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 4.0012 -2.5789 -0.0010 11 6 5.4635 -2.6203 0.1328 12 6 5.8707 -2.0307 1.4847 13 8 5.1695 -2.7073 2.5299 14 6 5.9477 -4.0705 0.0395 15 6 5.6055 -4.6266 -1.3453 16 8 6.2067 -3.8056 -2.3486 17 6 5.7562 -2.4495 -2.3401 18 6 6.1046 -1.8060 -0.9953 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6803 0.8888 21 1 3.8746 -0.6800 -0.8912 22 1 3.5563 -3.1197 0.7253 23 1 5.6222 -0.9697 1.5080 24 1 6.9441 -2.1557 1.6271 25 1 5.3788 -2.3844 3.4171 26 1 7.0269 -4.1047 0.1891 27 1 5.4538 -4.6694 0.8047 28 1 4.5236 -4.6298 -1.4785 29 1 5.9854 -5.6444 -1.4326 30 1 4.6764 -2.4243 -2.4862 31 1 6.2449 -1.8988 -3.1439 32 1 5.7227 -0.7854 -0.9701 33 1 7.1868 -1.7935 -0.8659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225252576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:19 Heat of formation + Delta-G solvation = -97.476927 kcal Electronic energy + Delta-G solvation = -15570.179383 eV Core-core repulsion = 13016.776305 eV Total energy + Delta-G solvation = -2553.403077 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.62596 -36.88350 -34.88439 -32.78844 -31.02501 -30.60671 -27.16593 -26.27817 -23.48332 -22.33273 -21.15564 -18.65442 -17.13230 -16.90061 -15.78442 -15.55413 -15.10328 -14.63233 -14.51257 -14.21379 -13.72558 -12.86847 -12.62434 -12.29727 -12.08276 -11.97683 -11.71652 -11.56957 -10.96775 -10.77381 -10.54857 -10.11679 -9.94721 -9.81780 -9.66922 -9.26040 -9.17817 -8.59257 -7.42249 -6.06642 -4.03716 3.25303 3.32750 3.33282 4.24828 4.34648 4.39785 4.91175 5.10848 5.20313 5.27113 5.34819 5.45832 5.56992 5.65080 5.72418 5.92691 5.97771 6.02268 6.09024 6.27626 6.35471 6.40395 6.54862 6.78740 7.09039 7.58011 7.60281 7.78554 7.92245 8.39799 8.65389 9.01809 9.55370 11.06847 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.031986 B = 0.010208 C = 0.009370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.173468 B = 2742.416356 C = 2987.698564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.513 4.513 8 H 0.078 0.922 9 C 0.163 3.837 10 N -0.662 5.662 11 C 0.113 3.887 12 C 0.048 3.952 13 O -0.564 6.564 14 C -0.134 4.134 15 C 0.068 3.932 16 O -0.392 6.392 17 C 0.071 3.929 18 C -0.143 4.143 19 H 0.263 0.737 20 H -0.014 1.014 21 H 0.021 0.979 22 H 0.347 0.653 23 H 0.048 0.952 24 H 0.037 0.963 25 H 0.374 0.626 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.651 -4.109 1.035 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.551 4.551 8 H 0.096 0.904 9 C 0.035 3.965 10 N -0.294 5.294 11 C 0.021 3.979 12 C -0.032 4.032 13 O -0.368 6.368 14 C -0.172 4.172 15 C -0.009 4.009 16 O -0.311 6.311 17 C -0.006 4.006 18 C -0.181 4.181 19 H 0.073 0.927 20 H 0.004 0.996 21 H 0.039 0.961 22 H 0.166 0.834 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.220 0.780 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.372 -4.432 -0.304 14.091 hybrid contribution 0.569 1.810 1.775 2.598 sum 13.942 -2.622 1.471 14.262 Atomic orbital electron populations 1.69902 1.06129 1.26788 1.51130 1.24897 0.94716 0.98838 0.94862 0.86846 0.80174 0.84046 0.78532 1.20132 1.21256 1.19483 1.21066 0.89028 0.94729 1.50316 0.90410 1.20027 0.96373 0.85618 0.94480 1.60681 1.00636 1.15256 1.52808 1.20968 0.91626 0.94648 0.90683 1.22950 0.94325 0.96273 0.89620 1.86441 1.69726 1.63232 1.17420 1.22102 1.00417 0.96022 0.98652 1.22466 0.98802 0.92992 0.86609 1.87796 1.67523 1.21095 1.54714 1.22423 1.00758 0.81890 0.95529 1.22195 0.99763 1.00263 0.95881 0.92696 0.99610 0.96103 0.83411 0.93380 0.94478 0.77993 0.91966 0.90585 0.91492 0.90122 0.90999 0.89925 0.90513 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.51 -14.63 9.81 -34.44 -0.34 -14.97 16 8 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.16 3.87 3.68 -4.98 -0.02 3.86 16 10 N -0.66 -13.58 4.88 -101.03 -0.49 -14.07 16 11 C 0.11 1.91 0.39 -131.41 -0.05 1.86 16 12 C 0.05 0.75 5.50 37.16 0.20 0.96 16 13 O -0.56 -8.78 12.53 -35.23 -0.44 -9.23 16 14 C -0.13 -2.00 4.96 -26.59 -0.13 -2.13 16 15 C 0.07 1.03 6.68 37.21 0.25 1.27 16 16 O -0.39 -6.45 10.76 -35.23 -0.38 -6.83 16 17 C 0.07 1.14 6.68 37.21 0.25 1.39 16 18 C -0.14 -2.28 4.55 -26.59 -0.12 -2.40 16 19 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 20 H -0.01 -0.33 5.32 -51.93 -0.28 -0.61 16 21 H 0.02 0.50 5.95 -51.93 -0.31 0.19 16 22 H 0.35 7.45 7.96 -39.30 -0.31 7.13 16 23 H 0.05 0.82 6.67 -51.93 -0.35 0.47 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.37 4.12 9.12 45.56 0.42 4.53 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 1.14 7.95 -51.93 -0.41 0.73 16 28 H 0.07 1.11 7.75 -51.93 -0.40 0.71 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.32 7.75 -51.93 -0.40 0.92 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.30 6.32 -51.93 -0.33 0.97 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 259.95 15.07 3.92 3.92 Total: -1.00 -31.36 259.95 -5.43 -36.79 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -4.08 Total: 7.81 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -0.06 Total: -8.27 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.28 Total: -41.02 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.82 Total: -16.05 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.36 -5.43 -36.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225252576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.689 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds