Wall clock time and date at job start Mon Mar 30 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47176 * 89.99381 * 8 6 4 10 10 H 1.48495 * 109.47439 * 209.99938 * 8 6 4 11 11 H 1.48500 * 109.46731 * 330.00116 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 H 1.08996 * 109.59899 * 305.32038 * 14 13 12 16 16 C 1.52943 * 109.60057 * 184.99701 * 14 13 12 17 17 C 1.53701 * 112.48935 * 209.96600 * 16 14 13 18 18 S 1.83393 * 104.97040 * 2.82732 * 17 16 14 19 19 C 1.55146 * 109.60373 * 65.46291 * 14 13 12 20 20 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 21 21 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 23 23 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 24 24 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 25 25 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 26 26 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 27 27 H 1.08998 * 108.88945 * 330.76465 * 16 14 13 28 28 H 1.09005 * 108.88515 * 89.31767 * 16 14 13 29 29 H 1.08997 * 110.34104 * 121.69776 * 17 16 14 30 30 H 1.08999 * 110.34250 * 243.95531 * 17 16 14 31 31 H 1.09010 * 111.13180 * 279.27952 * 19 14 13 32 32 H 1.08995 * 111.13609 * 43.45602 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6305 -0.5441 4.4118 10 1 1.3445 -0.9491 5.1123 11 1 2.4881 -2.5654 3.7122 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5745 15 1 3.5480 -1.0076 -3.3402 16 6 2.7800 0.4427 -4.7376 17 6 2.5673 -0.2256 -6.1053 18 16 2.0838 -1.9520 -5.7189 19 6 1.5649 -1.6179 -3.9856 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7089 1.1613 3.4844 24 1 1.4495 -1.4979 -1.4101 25 1 1.0871 0.6163 -2.5526 26 1 2.7589 1.0462 -2.1182 27 1 2.0668 1.2598 -4.6294 28 1 3.7904 0.8498 -4.6994 29 1 1.7703 0.2774 -6.6529 30 1 3.4921 -0.2112 -6.6820 31 1 1.6650 -2.5097 -3.3666 32 1 0.5477 -1.2282 -3.9481 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226403002.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:48 Heat of formation + Delta-G solvation = -33.399857 kcal Electronic energy + Delta-G solvation = -12619.425168 eV Core-core repulsion = 10511.553551 eV Total energy + Delta-G solvation = -2107.871616 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.87675 -36.64768 -34.20956 -31.42034 -29.41980 -27.28246 -26.95790 -23.92975 -22.06113 -20.96389 -18.45291 -17.49195 -17.06627 -16.67039 -15.67471 -15.34106 -15.12588 -14.59195 -14.49343 -13.65383 -13.58230 -13.24450 -12.99436 -12.85117 -12.78389 -12.56794 -12.24739 -12.11364 -12.04827 -11.76944 -11.50782 -11.05659 -10.79311 -10.47973 -8.96994 -8.72679 -8.09392 -6.20483 0.91700 1.39085 1.43892 1.44556 1.55241 2.44667 3.19163 3.44302 3.59835 3.93703 4.05310 4.15596 4.28388 4.43288 4.57701 4.67792 4.70141 4.82601 4.86740 4.88728 4.89949 5.09985 5.17191 5.28567 5.44567 5.70173 5.82406 6.27890 6.64503 6.83508 6.95015 7.49820 8.96071 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.062426 B = 0.005908 C = 0.005773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.423289 B = 4738.271149 C = 4849.101468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.003 0.997 4 C -0.516 4.516 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.688 5.688 13 C 0.075 3.925 14 C -0.079 4.079 15 H 0.082 0.918 16 C -0.122 4.122 17 C -0.052 4.052 18 S -0.351 6.351 19 C -0.051 4.051 20 H 0.026 0.974 21 H 0.032 0.968 22 H 0.061 0.939 23 H 0.261 0.739 24 H 0.331 0.669 25 H 0.024 0.976 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.590 -0.796 -14.183 14.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.318 5.318 13 C -0.057 4.057 14 C -0.100 4.100 15 H 0.101 0.899 16 C -0.162 4.162 17 C -0.200 4.200 18 S -0.124 6.124 19 C -0.199 4.199 20 H 0.045 0.955 21 H 0.051 0.949 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.149 0.851 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.202 -1.623 -14.581 14.835 hybrid contribution -0.862 0.834 1.520 1.937 sum 1.340 -0.788 -13.061 13.153 Atomic orbital electron populations 1.22238 0.99979 0.99258 1.00112 1.18937 0.90043 0.92758 0.87652 0.97937 1.21477 1.30351 1.12482 0.91137 0.92741 1.25709 0.95464 0.95890 1.01886 1.70005 1.38068 1.24295 1.23975 0.85529 0.77923 0.79061 0.78919 1.20371 1.20944 1.19405 1.60679 1.57898 1.09682 1.03576 1.21929 0.98566 0.95255 0.89910 1.22005 0.98833 0.94709 0.94450 0.89910 1.21958 1.04661 0.98702 0.90831 1.23981 1.05581 0.90521 0.99893 1.87883 1.85680 1.19412 1.19451 1.24404 1.01532 1.02106 0.91865 0.95494 0.94929 0.92060 0.93019 0.85112 0.95756 0.92147 0.90194 0.88988 0.87969 0.86953 0.87796 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.39 8.94 71.98 0.64 -6.74 16 2 C 0.21 10.69 2.57 44.17 0.11 10.80 16 3 H 0.00 0.15 7.80 -2.39 -0.02 0.13 16 4 C -0.52 -28.53 8.84 25.60 0.23 -28.30 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.47 5.30 84.65 0.45 0.92 16 7 N -0.92 -53.01 11.32 21.44 0.24 -52.77 16 8 Si 0.96 43.88 29.54 68.60 2.03 45.90 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 N -0.69 -27.84 6.23 -495.42 -3.09 -30.93 16 13 C 0.07 2.42 4.74 86.30 0.41 2.83 16 14 C -0.08 -2.03 2.76 -10.08 -0.03 -2.06 16 15 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 16 C -0.12 -2.40 5.86 30.81 0.18 -2.22 16 17 C -0.05 -0.94 7.38 72.22 0.53 -0.40 16 18 S -0.35 -8.68 23.23 -56.49 -1.31 -10.00 16 19 C -0.05 -1.29 6.10 72.72 0.44 -0.85 16 20 H 0.03 1.11 7.45 -2.39 -0.02 1.09 16 21 H 0.03 1.46 8.13 -2.39 -0.02 1.44 16 22 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 23 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 24 H 0.33 12.56 7.33 -89.69 -0.66 11.90 16 25 H 0.02 0.78 7.41 -2.39 -0.02 0.76 16 26 H 0.06 2.06 8.05 -2.39 -0.02 2.04 16 27 H 0.08 1.49 7.80 -2.39 -0.02 1.47 16 28 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 2.71 7.77 -2.38 -0.02 2.69 16 32 H 0.09 2.21 8.09 -2.39 -0.02 2.19 16 Total: -1.00 -59.57 268.74 1.27 -58.30 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.43 Total: 15.51 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 2.97 Total: -26.03 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -2.84 Total: -83.69 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.31 Total: -10.00 kcal Total: -59.57 1.27 -58.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226403002.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.904 kcal (2) G-P(sol) polarization free energy of solvation -59.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds