Wall clock time and date at job start Mon Mar 30 2020 02:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.46940 * 2 1 4 4 C 1.50698 * 109.47005 * 119.99946 * 2 1 3 5 5 H 1.08004 * 119.99466 * 120.00049 * 4 2 1 6 6 C 1.37872 * 120.00184 * 299.99934 * 4 2 1 7 7 N 1.31516 * 120.00162 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00089 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47059 * 89.99586 * 8 6 4 10 10 H 1.48496 * 109.47003 * 209.99997 * 8 6 4 11 11 H 1.48497 * 109.46657 * 329.99675 * 8 6 4 12 12 N 1.46904 * 109.46848 * 239.99950 * 2 1 3 13 13 C 1.46900 * 110.99971 * 84.99737 * 12 2 1 14 14 C 1.52997 * 109.47056 * 179.97438 * 13 12 2 15 15 H 1.09003 * 108.71057 * 56.54147 * 14 13 12 16 16 C 1.52336 * 108.86802 * 175.00385 * 14 13 12 17 17 C 1.54257 * 112.58746 * 120.82059 * 16 14 13 18 18 S 1.83954 * 102.58232 * 24.52668 * 17 16 14 19 19 C 1.54255 * 108.86978 * 298.07852 * 14 13 12 20 20 H 1.09002 * 109.47098 * 300.00024 * 1 2 3 21 21 H 1.08993 * 109.47614 * 60.00206 * 1 2 3 22 22 H 1.09008 * 109.47260 * 180.02562 * 1 2 3 23 23 H 0.96994 * 119.99755 * 180.02562 * 7 6 4 24 24 H 1.00904 * 110.99723 * 321.04553 * 12 2 1 25 25 H 1.09003 * 109.46741 * 59.99702 * 13 12 2 26 26 H 1.08998 * 109.47106 * 300.00259 * 13 12 2 27 27 H 1.08999 * 108.86630 * 241.63643 * 16 14 13 28 28 H 1.08998 * 108.86851 * 359.97438 * 16 14 13 29 29 H 1.09006 * 110.78494 * 142.80296 * 17 16 14 30 30 H 1.08999 * 110.78486 * 266.25491 * 17 16 14 31 31 H 1.09004 * 110.79068 * 332.92478 * 19 14 13 32 32 H 1.09000 * 110.78939 * 96.37513 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6305 -0.5441 4.4118 10 1 1.3445 -0.9490 5.1122 11 1 2.4879 -2.5654 3.7121 12 7 2.0196 -0.6925 -1.1995 13 6 2.0823 0.2225 -2.3470 14 6 2.5960 -0.5329 -3.5742 15 1 1.9464 -1.3894 -3.7549 16 6 2.5381 0.3929 -4.7826 17 6 3.9204 0.6043 -5.4338 18 16 4.8363 -0.9095 -4.9304 19 6 4.0234 -1.0417 -3.2855 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 0.7088 1.1612 3.4844 24 1 1.4494 -1.4980 -1.4100 25 1 2.7587 1.0462 -2.1182 26 1 1.0869 0.6163 -2.5525 27 1 1.8616 -0.0350 -5.5224 28 1 2.1449 1.3595 -4.4675 29 1 3.8323 0.6604 -6.5188 30 1 4.4023 1.4979 -5.0370 31 1 4.5214 -0.4034 -2.5556 32 1 4.0037 -2.0772 -2.9458 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226403015.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:52 Heat of formation + Delta-G solvation = -15.018843 kcal Electronic energy + Delta-G solvation = -12640.883727 eV Core-core repulsion = 10533.809172 eV Total energy + Delta-G solvation = -2107.074556 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.53257 -35.05046 -32.32579 -30.00888 -27.91936 -25.72952 -25.09486 -22.83336 -20.29330 -19.60649 -16.55712 -16.21192 -15.56156 -14.85211 -14.72129 -13.80180 -13.53768 -13.21557 -12.85454 -12.38411 -11.86937 -11.72321 -11.54831 -11.31757 -11.26388 -10.92900 -10.74773 -10.58279 -10.28196 -10.15682 -9.86641 -9.68056 -9.01633 -8.37609 -7.64111 -7.27997 -6.00031 -4.03421 2.01994 2.45609 3.32252 3.38451 3.42529 4.42157 4.58156 4.76894 4.89781 5.17226 5.31498 5.32161 5.48912 5.54180 5.72683 5.87937 5.88468 6.01335 6.13721 6.30033 6.45843 6.66045 6.80866 7.06607 7.32899 7.71219 7.86218 8.24764 8.49369 8.58648 9.03856 9.62227 11.07057 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.050245 B = 0.006399 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.132250 B = 4374.731446 C = 4744.893456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.495 4.495 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.684 5.684 13 C 0.066 3.934 14 C -0.091 4.091 15 H 0.077 0.923 16 C -0.121 4.121 17 C -0.060 4.060 18 S -0.337 6.337 19 C -0.028 4.028 20 H 0.089 0.911 21 H 0.004 0.996 22 H 0.028 0.972 23 H 0.259 0.741 24 H 0.325 0.675 25 H 0.066 0.934 26 H 0.022 0.978 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.090 -0.343 -12.710 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.313 5.313 13 C -0.065 4.065 14 C -0.112 4.112 15 H 0.096 0.904 16 C -0.161 4.161 17 C -0.208 4.208 18 S -0.110 6.110 19 C -0.175 4.175 20 H 0.107 0.893 21 H 0.023 0.977 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.141 0.859 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.547 -0.827 -12.965 13.467 hybrid contribution -1.581 0.413 1.245 2.055 sum 1.966 -0.414 -11.720 11.891 Atomic orbital electron populations 1.22429 1.00743 0.99194 1.00450 1.19165 0.89574 0.94385 0.86533 0.94958 1.21157 1.30167 1.12449 0.89600 0.91930 1.24956 0.95316 0.95224 0.99081 1.69881 1.37307 1.23275 1.23351 0.86506 0.78456 0.80033 0.82443 1.20756 1.21423 1.19927 1.60835 1.58034 1.09035 1.03444 1.22116 0.98345 0.95770 0.90311 1.21732 0.96379 0.98471 0.94645 0.90433 1.22048 0.96182 1.00813 0.97020 1.24074 0.96380 0.96980 1.03359 1.87888 1.60610 1.37932 1.24618 1.24144 0.94914 1.05789 0.92690 0.89276 0.97701 0.95333 0.93073 0.85898 0.91544 0.96028 0.90977 0.90548 0.88300 0.89461 0.88505 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 8.94 37.16 0.33 -3.66 16 2 C 0.21 5.18 2.57 -68.86 -0.18 5.00 16 3 H 0.03 0.88 7.80 -51.93 -0.41 0.47 16 4 C -0.49 -13.52 8.84 -34.44 -0.30 -13.82 16 5 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.56 11.32 55.43 0.63 -24.94 16 8 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.68 -13.72 5.86 -107.95 -0.63 -14.35 16 13 C 0.07 1.09 4.34 -3.83 -0.02 1.07 16 14 C -0.09 -1.24 2.80 -90.30 -0.25 -1.49 16 15 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 16 C -0.12 -1.36 5.98 -26.41 -0.16 -1.52 16 17 C -0.06 -0.65 7.46 37.82 0.28 -0.37 16 18 S -0.34 -4.67 23.27 -107.50 -2.50 -7.17 16 19 C -0.03 -0.40 6.57 37.81 0.25 -0.15 16 20 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 21 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 22 H 0.03 0.64 8.13 -51.92 -0.42 0.22 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 24 H 0.32 6.21 8.47 -39.29 -0.33 5.88 16 25 H 0.07 1.16 8.01 -51.93 -0.42 0.74 16 26 H 0.02 0.36 7.43 -51.93 -0.39 -0.02 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.08 0.82 7.51 -51.93 -0.39 0.43 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 1.51 7.82 -51.93 -0.41 1.11 16 32 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 269.63 15.07 4.06 4.06 Total: -1.00 -27.99 269.63 -8.72 -36.71 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.12 Total: 2.82 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -0.14 Total: -13.53 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.00 Total: -39.28 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -2.50 Total: -7.17 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.99 -8.72 -36.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226403015.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.695 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds