Wall clock time and date at job start Mon Mar 30 2020 02:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47464 * 2 1 4 4 C 1.50696 * 109.47081 * 239.99623 * 2 1 3 5 5 H 1.07999 * 120.00635 * 240.00286 * 4 2 1 6 6 C 1.37885 * 119.99854 * 60.00657 * 4 2 1 7 7 N 1.31509 * 119.99862 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99802 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47496 * 89.99952 * 8 6 4 10 10 H 1.48507 * 109.46753 * 209.99608 * 8 6 4 11 11 H 1.48493 * 109.47545 * 329.99509 * 8 6 4 12 12 N 1.46905 * 109.46649 * 120.00072 * 2 1 3 13 13 C 1.46904 * 110.99791 * 274.99498 * 12 2 1 14 14 C 1.53003 * 109.46791 * 180.02562 * 13 12 2 15 15 H 1.08996 * 108.73248 * 52.05788 * 14 13 12 16 16 C 1.52934 * 108.88529 * 170.56699 * 14 13 12 17 17 C 1.55159 * 108.96139 * 150.89180 * 16 14 13 18 18 S 1.83988 * 100.90873 * 318.56189 * 17 16 14 19 19 C 1.53707 * 108.88501 * 293.54807 * 14 13 12 20 20 H 1.08998 * 109.47464 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.46942 * 300.00292 * 1 2 3 22 22 H 1.09003 * 109.46642 * 59.99488 * 1 2 3 23 23 H 0.97002 * 119.99943 * 180.02562 * 7 6 4 24 24 H 1.00895 * 110.99669 * 38.95399 * 12 2 1 25 25 H 1.08996 * 109.46745 * 60.00679 * 13 12 2 26 26 H 1.08993 * 109.47146 * 300.00339 * 13 12 2 27 27 H 1.08999 * 109.60449 * 270.82305 * 16 14 13 28 28 H 1.09000 * 109.60581 * 31.14610 * 16 14 13 29 29 H 1.08994 * 111.13431 * 200.65015 * 17 16 14 30 30 H 1.08994 * 111.12916 * 76.47159 * 17 16 14 31 31 H 1.08999 * 110.34351 * 117.51369 * 19 14 13 32 32 H 1.08996 * 110.43289 * 355.30211 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.3449 -2.1616 -4.4124 10 1 2.4874 -0.1402 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 7 2.0196 -0.6926 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.5961 -0.5329 3.5743 15 1 3.5246 -1.0391 3.3104 16 6 2.8804 0.4723 4.6912 17 6 2.6776 -0.2262 6.0618 18 16 1.1554 -1.2055 5.7316 19 6 1.5537 -1.5862 3.9823 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.7084 1.1609 -3.4844 24 1 1.4494 -1.4979 1.4100 25 1 1.0871 0.6163 2.5525 26 1 2.7588 1.0461 2.1182 27 1 3.9075 0.8280 4.6104 28 1 2.1940 1.3150 4.6082 29 1 2.5112 0.5036 6.8540 30 1 3.5193 -0.8765 6.2996 31 1 1.9748 -2.5881 3.8991 32 1 0.6613 -1.4983 3.3628 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226403021.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:54 Heat of formation + Delta-G solvation = -32.777793 kcal Electronic energy + Delta-G solvation = -12644.681517 eV Core-core repulsion = 10536.836875 eV Total energy + Delta-G solvation = -2107.844642 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.95304 -36.64232 -34.19981 -31.40250 -29.42835 -27.29426 -26.97004 -23.88894 -22.07263 -20.97454 -18.43345 -17.65214 -17.06251 -16.66127 -15.66714 -15.45827 -15.02111 -14.55023 -14.39609 -13.74074 -13.53399 -13.21553 -13.00843 -12.82796 -12.78426 -12.61675 -12.29023 -12.18147 -12.05577 -11.70867 -11.55136 -11.03324 -10.80596 -10.49050 -8.99628 -8.72907 -8.09902 -6.21334 0.92998 1.40306 1.43772 1.44341 1.55442 2.44323 3.18582 3.42613 3.59628 3.92126 4.06012 4.12276 4.35760 4.47845 4.58369 4.64254 4.68621 4.79668 4.83936 4.86643 4.91900 5.08708 5.18503 5.27152 5.42715 5.68457 5.80591 6.26255 6.62545 6.81185 6.93704 7.48889 8.95743 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.065158 B = 0.005927 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.621002 B = 4722.852605 C = 4757.538212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H 0.002 0.998 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.962 3.038 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.686 5.686 13 C 0.072 3.928 14 C -0.086 4.086 15 H 0.089 0.911 16 C -0.117 4.117 17 C -0.048 4.048 18 S -0.358 6.358 19 C -0.050 4.050 20 H 0.031 0.969 21 H 0.023 0.977 22 H 0.062 0.938 23 H 0.261 0.739 24 H 0.330 0.670 25 H 0.017 0.983 26 H 0.060 0.940 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.483 -1.795 14.255 14.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.554 4.554 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.194 1.194 12 N -0.316 5.316 13 C -0.059 4.059 14 C -0.106 4.106 15 H 0.108 0.892 16 C -0.156 4.156 17 C -0.195 4.195 18 S -0.132 6.132 19 C -0.198 4.198 20 H 0.050 0.950 21 H 0.042 0.958 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.148 0.852 25 H 0.035 0.965 26 H 0.079 0.921 27 H 0.120 0.880 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.132 -1.901 14.658 15.109 hybrid contribution -0.112 0.151 -1.606 1.617 sum 3.020 -1.749 13.051 13.510 Atomic orbital electron populations 1.22248 1.00187 0.99184 0.99999 1.18938 0.89895 0.92802 0.87770 0.97983 1.21467 1.30445 1.12479 0.91036 0.92590 1.25741 0.95472 0.95860 1.01987 1.70011 1.38082 1.24312 1.24005 0.85498 0.78810 0.78172 0.78765 1.20156 1.21022 1.19415 1.60735 1.57753 1.09605 1.03542 1.22010 0.98279 0.95367 0.90199 1.21644 0.98683 0.95248 0.94998 0.89249 1.22395 1.04223 0.98202 0.90777 1.24420 0.94695 0.99994 1.00405 1.87913 1.35594 1.72186 1.17556 1.23997 1.01560 1.02347 0.91886 0.94972 0.95848 0.91966 0.93008 0.85199 0.96519 0.92126 0.87973 0.90817 0.85989 0.87613 0.88356 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.60 8.94 71.98 0.64 -6.96 16 2 C 0.21 10.84 2.57 44.17 0.11 10.95 16 3 H 0.00 0.12 7.80 -2.39 -0.02 0.11 16 4 C -0.52 -28.62 8.84 25.60 0.23 -28.39 16 5 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.41 5.30 84.66 0.45 0.86 16 7 N -0.92 -53.44 11.32 21.45 0.24 -53.20 16 8 Si 0.96 43.90 29.54 68.60 2.03 45.92 16 9 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 N -0.69 -28.10 6.23 -495.44 -3.09 -31.18 16 13 C 0.07 2.41 4.49 86.30 0.39 2.79 16 14 C -0.09 -2.17 2.86 -10.58 -0.03 -2.20 16 15 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 16 C -0.12 -2.30 5.78 31.31 0.18 -2.12 16 17 C -0.05 -0.83 7.52 72.72 0.55 -0.28 16 18 S -0.36 -8.99 23.23 -56.49 -1.31 -10.30 16 19 C -0.05 -1.28 6.36 72.22 0.46 -0.82 16 20 H 0.03 1.48 8.13 -2.39 -0.02 1.46 16 21 H 0.02 1.00 7.45 -2.39 -0.02 0.98 16 22 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 23 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 24 H 0.33 12.75 7.17 -89.70 -0.64 12.10 16 25 H 0.02 0.58 7.40 -2.39 -0.02 0.57 16 26 H 0.06 2.11 8.02 -2.39 -0.02 2.09 16 27 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 1.55 7.84 -2.39 -0.02 1.53 16 29 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.08 2.38 6.98 -2.39 -0.02 2.37 16 Total: -1.00 -60.44 267.98 1.29 -59.15 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.44 Total: 15.77 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 2.98 Total: -26.17 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -2.84 Total: -84.38 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.31 Total: -10.30 kcal Total: -60.44 1.29 -59.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226403021.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.374 kcal (2) G-P(sol) polarization free energy of solvation -60.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds