Wall clock time and date at job start Mon Mar 30 2020 02:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99875 * 2 1 4 4 H 1.48495 * 109.47005 * 270.00222 * 3 2 1 5 5 H 1.48495 * 109.46939 * 30.00414 * 3 2 1 6 6 H 1.48497 * 109.47015 * 150.00268 * 3 2 1 7 7 C 1.37879 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00167 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99819 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47125 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47138 * 179.97438 * 10 9 7 12 12 C 1.46906 * 110.99888 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47378 * 180.02562 * 12 11 10 14 14 O 1.42907 * 110.45276 * 302.60515 * 13 12 11 15 15 C 1.54504 * 110.51326 * 180.02562 * 13 12 11 16 16 C 1.54482 * 104.06209 * 241.35228 * 15 13 12 17 17 O 1.44425 * 104.80247 * 336.01993 * 16 15 13 18 18 C 1.44426 * 105.27753 * 40.51303 * 17 16 15 19 19 H 0.96998 * 120.00025 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47467 * 59.99932 * 9 7 2 21 21 H 1.09004 * 109.47021 * 299.99340 * 9 7 2 22 22 H 1.08997 * 109.46770 * 59.99791 * 10 9 7 23 23 H 1.08995 * 109.47019 * 300.00004 * 10 9 7 24 24 H 1.00904 * 110.99913 * 303.95145 * 11 10 9 25 25 H 1.09004 * 109.47040 * 299.99934 * 12 11 10 26 26 H 1.09000 * 109.47033 * 59.99886 * 12 11 10 27 27 H 0.96693 * 113.99995 * 59.30025 * 14 13 12 28 28 H 1.09003 * 110.51315 * 359.97438 * 15 13 12 29 29 H 1.09000 * 110.51366 * 122.70778 * 15 13 12 30 30 H 1.09006 * 110.37336 * 94.84964 * 16 15 13 31 31 H 1.08997 * 110.37354 * 217.08082 * 16 15 13 32 32 H 1.08999 * 110.37405 * 200.65904 * 18 17 16 33 33 H 1.09000 * 110.37463 * 78.31766 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6365 -0.0010 11 7 5.4906 -2.6364 -0.0022 12 6 6.0172 -4.0078 -0.0027 13 6 7.5466 -3.9670 -0.0033 14 8 8.0261 -3.2322 -1.1313 15 6 8.1264 -5.3991 -0.0045 16 6 8.9337 -5.4783 1.3102 17 8 9.2615 -4.1074 1.6251 18 6 8.0721 -3.3502 1.3120 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6803 0.8888 21 1 3.8745 -0.6800 -0.8912 22 1 3.6580 -3.1505 -0.8907 23 1 3.6587 -3.1501 0.8892 24 1 5.8516 -2.1105 -0.7841 25 1 5.6684 -4.5312 0.8876 26 1 5.6670 -4.5311 -0.8924 27 1 7.7164 -2.3168 -1.1648 28 1 7.3234 -6.1363 -0.0042 29 1 8.7807 -5.5456 -0.8639 30 1 8.3261 -5.9149 2.1029 31 1 9.8417 -6.0631 1.1633 32 1 8.3193 -2.2987 1.1658 33 1 7.3324 -3.4604 2.1049 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227136246.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:25 Heat of formation + Delta-G solvation = -128.900777 kcal Electronic energy + Delta-G solvation = -14607.099435 eV Core-core repulsion = 12052.333717 eV Total energy + Delta-G solvation = -2554.765718 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.95861 -37.98245 -36.59864 -34.86819 -32.88261 -31.64040 -29.65370 -26.87095 -24.93677 -23.55828 -22.37142 -21.33671 -18.97292 -18.15622 -17.46782 -17.19577 -16.51714 -16.31611 -15.91924 -15.29715 -14.95607 -14.64768 -14.41999 -13.99544 -13.63606 -13.43980 -13.13412 -12.94030 -12.57419 -12.39372 -12.09733 -11.94143 -11.76642 -11.49501 -11.42228 -11.12499 -10.77192 -10.57947 -9.43962 -8.30219 -6.35233 1.37566 1.40236 1.52617 2.36879 2.93185 3.05803 3.07156 3.19165 3.59993 3.76940 3.95553 4.16621 4.29237 4.39086 4.49510 4.57367 4.67207 4.73099 4.77377 4.84430 4.93668 5.00972 5.02245 5.26360 5.46860 5.62875 5.75944 5.99244 6.22693 6.40021 6.68359 6.73561 7.30032 8.86501 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.056789 B = 0.005609 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.931698 B = 4990.889425 C = 5148.831649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.245 1.245 7 C -0.536 4.536 8 H 0.031 0.969 9 C -0.005 4.005 10 C 0.088 3.912 11 N -0.689 5.689 12 C 0.041 3.959 13 C 0.106 3.894 14 O -0.565 6.565 15 C -0.143 4.143 16 C 0.041 3.959 17 O -0.399 6.399 18 C 0.033 3.967 19 H 0.267 0.733 20 H 0.025 0.975 21 H 0.020 0.980 22 H 0.017 0.983 23 H 0.059 0.941 24 H 0.341 0.659 25 H 0.087 0.913 26 H 0.039 0.961 27 H 0.388 0.612 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.014 -8.644 0.625 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.168 1.168 7 C -0.574 4.574 8 H 0.049 0.951 9 C -0.043 4.043 10 C -0.041 4.041 11 N -0.322 5.322 12 C -0.088 4.088 13 C 0.065 3.935 14 O -0.373 6.373 15 C -0.181 4.181 16 C -0.035 4.035 17 O -0.318 6.318 18 C -0.044 4.044 19 H 0.075 0.925 20 H 0.044 0.956 21 H 0.038 0.962 22 H 0.036 0.964 23 H 0.078 0.922 24 H 0.160 0.840 25 H 0.106 0.894 26 H 0.057 0.943 27 H 0.238 0.762 28 H 0.123 0.877 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 18.414 -8.963 1.265 20.518 hybrid contribution -1.131 0.904 -0.918 1.714 sum 17.282 -8.059 0.348 19.072 Atomic orbital electron populations 1.70067 1.08403 1.28259 1.52524 1.26018 0.95599 1.03635 0.93945 0.85592 0.79516 0.77928 0.79190 1.19113 1.21194 1.16819 1.21421 0.92070 0.93169 1.50748 0.95061 1.19445 0.93447 0.94403 0.96990 1.21625 0.85772 0.97528 0.99168 1.60538 1.08098 1.13725 1.49810 1.22614 0.93723 0.90601 1.01888 1.22627 0.91662 0.92991 0.86222 1.86521 1.75409 1.29148 1.46213 1.22997 1.01267 0.94032 0.99813 1.23627 1.00816 0.83843 0.95213 1.89102 1.35767 1.19698 1.87282 1.24031 0.87232 0.97126 0.95996 0.92450 0.95620 0.96161 0.96424 0.92235 0.84032 0.89438 0.94304 0.76194 0.87747 0.89570 0.90647 0.87328 0.88673 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 2 C 0.00 0.28 5.47 84.66 0.46 0.75 16 3 Si 0.95 43.84 27.47 68.60 1.88 45.73 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 7 C -0.54 -30.61 9.66 25.60 0.25 -30.37 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C -0.01 -0.23 4.30 29.85 0.13 -0.10 16 10 C 0.09 3.29 5.62 86.31 0.49 3.78 16 11 N -0.69 -19.70 6.25 -513.88 -3.21 -22.91 16 12 C 0.04 0.98 4.60 86.30 0.40 1.38 16 13 C 0.11 2.32 1.24 -9.78 -0.01 2.30 16 14 O -0.56 -13.14 12.94 -148.98 -1.93 -15.06 16 15 C -0.14 -2.57 6.54 31.61 0.21 -2.36 16 16 C 0.04 0.72 7.63 72.49 0.55 1.27 16 17 O -0.40 -9.85 11.65 -148.98 -1.74 -11.58 16 18 C 0.03 0.76 6.72 72.49 0.49 1.25 16 19 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 20 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 21 H 0.02 0.87 7.57 -2.39 -0.02 0.86 16 22 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.34 8.82 7.13 -89.69 -0.64 8.18 16 25 H 0.09 2.00 8.08 -2.38 -0.02 1.98 16 26 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.39 7.23 7.50 -74.06 -0.56 6.68 16 28 H 0.10 1.50 7.73 -2.39 -0.02 1.48 16 29 H 0.09 1.61 8.00 -2.39 -0.02 1.59 16 30 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 32 H 0.10 2.18 8.09 -2.39 -0.02 2.16 16 33 H 0.07 1.68 7.82 -2.39 -0.02 1.66 16 Total: -1.00 -67.50 270.95 -1.89 -69.38 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -0.15 Total: 15.85 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: 2.96 Total: -22.10 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -2.91 Total: -82.21 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -3.66 Total: -26.65 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.73 kcal Total: -67.50 -1.89 -69.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227136246.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.517 kcal (2) G-P(sol) polarization free energy of solvation -67.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds