Wall clock time and date at job start Mon Mar 30 2020 03:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.86663 * 2 1 4 4 O 1.43742 * 109.87864 * 238.83905 * 2 1 3 5 5 C 1.44376 * 106.97690 * 267.08842 * 4 2 1 6 6 C 1.55353 * 103.49910 * 319.91073 * 5 4 2 7 7 C 1.54098 * 109.87942 * 121.00406 * 2 1 3 8 8 O 1.42905 * 110.48739 * 358.72269 * 7 2 1 9 9 C 1.52990 * 110.48928 * 236.20697 * 7 2 1 10 10 N 1.46900 * 109.47353 * 186.84586 * 9 7 2 11 11 C 1.46901 * 111.00119 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46948 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00455 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00093 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00307 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00285 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46999 * 89.99791 * 16 14 12 18 18 H 1.48502 * 109.47375 * 209.99862 * 16 14 12 19 19 H 1.48500 * 109.47035 * 329.99906 * 16 14 12 20 20 H 1.09003 * 109.47075 * 298.99044 * 1 2 3 21 21 H 1.08995 * 109.46843 * 58.99435 * 1 2 3 22 22 H 1.09003 * 109.46995 * 178.99211 * 1 2 3 23 23 H 1.09000 * 110.62015 * 78.43297 * 5 4 2 24 24 H 1.08995 * 110.62282 * 201.28676 * 5 4 2 25 25 H 1.09006 * 110.95676 * 278.92041 * 6 5 4 26 26 H 1.08994 * 111.00741 * 155.20972 * 6 5 4 27 27 H 0.96696 * 114.00036 * 178.15373 * 8 7 2 28 28 H 1.09008 * 109.47251 * 306.84118 * 9 7 2 29 29 H 1.09003 * 109.47841 * 66.84653 * 9 7 2 30 30 H 1.00903 * 110.99924 * 303.95428 * 10 9 7 31 31 H 1.09000 * 109.47331 * 299.99840 * 11 10 9 32 32 H 1.08997 * 109.46866 * 60.00512 * 11 10 9 33 33 H 0.96997 * 120.00510 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1567 5 6 2.2281 -2.0723 -0.7620 6 6 2.8347 -1.9515 0.6632 7 6 2.0541 -0.7465 1.2421 8 8 0.9656 -1.1976 2.0507 9 6 2.9858 0.1546 2.0549 10 7 3.5993 -0.6254 3.1381 11 6 4.5029 0.2091 3.9412 12 6 5.1125 -0.6236 5.0394 13 1 4.8541 -1.6681 5.1319 14 6 5.9992 -0.0517 5.9268 15 7 6.3136 1.2204 5.8147 16 14 6.7543 -1.0837 7.2886 17 1 8.0180 -1.6946 6.8039 18 1 7.0401 -0.2210 8.4630 19 1 5.8050 -2.1560 7.6814 20 1 -0.3633 0.4981 0.8989 21 1 -0.3633 0.5294 -0.8808 22 1 -0.3633 -1.0275 -0.0181 23 1 1.2814 -2.6117 -0.7320 24 1 2.9275 -2.5639 -1.4382 25 1 3.9023 -1.7367 0.6156 26 1 2.6463 -2.8532 1.2457 27 1 1.2372 -1.6987 2.8319 28 1 3.7664 0.5505 1.4052 29 1 2.4139 0.9794 2.4801 30 1 2.8944 -1.0566 3.7172 31 1 5.2940 0.6051 3.3043 32 1 3.9419 1.0345 4.3794 33 1 6.9377 1.6227 6.4388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227147466.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:30 Heat of formation + Delta-G solvation = -102.913878 kcal Electronic energy + Delta-G solvation = -14952.443389 eV Core-core repulsion = 12398.804548 eV Total energy + Delta-G solvation = -2553.638841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.04941 -36.54146 -34.64350 -32.46106 -31.21047 -30.76690 -27.95624 -25.84148 -23.30372 -22.02853 -21.08189 -20.25715 -17.03489 -16.49054 -16.31076 -15.79554 -14.72824 -14.52231 -14.34603 -13.65343 -13.52580 -12.88682 -12.75213 -12.59898 -12.30440 -11.77844 -11.44711 -11.39516 -11.21267 -11.03581 -10.88727 -10.75022 -10.36798 -9.97714 -9.75302 -9.57774 -9.20044 -8.54075 -7.45884 -6.08993 -4.11855 3.28571 3.34527 3.37621 3.96083 4.20006 4.36513 4.60974 4.84677 4.97898 5.26668 5.27547 5.34068 5.39068 5.48291 5.66822 5.69349 5.80114 5.95043 6.09668 6.18924 6.25485 6.29128 6.41110 6.89581 7.13646 7.31533 7.68514 7.76246 8.03668 8.22628 8.47718 8.96533 9.53447 11.02082 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.057426 B = 0.006082 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.466331 B = 4602.779555 C = 4680.750222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.085 3.915 3 H 0.100 0.900 4 O -0.373 6.373 5 C 0.044 3.956 6 C -0.162 4.162 7 C 0.107 3.893 8 O -0.554 6.554 9 C 0.039 3.961 10 N -0.685 5.685 11 C 0.195 3.805 12 C -0.517 4.517 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.901 3.099 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.069 0.931 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.379 0.621 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.323 0.677 31 H 0.029 0.971 32 H -0.012 1.012 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 -4.473 -9.650 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.027 3.973 3 H 0.117 0.883 4 O -0.292 6.292 5 C -0.032 4.032 6 C -0.200 4.200 7 C 0.066 3.934 8 O -0.361 6.361 9 C -0.092 4.092 10 N -0.317 5.317 11 C 0.068 3.932 12 C -0.555 4.555 13 H 0.081 0.919 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.728 3.272 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 H 0.088 0.912 21 H 0.072 0.928 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.228 0.772 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.140 0.860 31 H 0.047 0.953 32 H 0.006 0.994 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.858 -4.170 -10.626 14.448 hybrid contribution 0.223 -0.243 1.970 1.997 sum -8.635 -4.413 -8.656 12.998 Atomic orbital electron populations 1.21920 0.94810 1.02671 1.01591 1.22709 0.94873 0.96270 0.83472 0.88265 1.88897 1.86188 1.21149 1.32976 1.23628 0.99608 0.84071 0.95904 1.23658 1.01815 0.98768 0.95732 1.22558 0.86058 0.93745 0.91027 1.86472 1.33362 1.75625 1.40675 1.22517 0.96423 0.94704 0.95525 1.60737 1.21501 1.34495 1.14919 1.19563 0.90786 0.91350 0.91491 1.21151 1.25800 0.96690 1.11887 0.91947 1.24998 0.96579 0.95016 0.97963 1.69959 1.34683 1.11305 1.37679 0.86461 0.79575 0.79941 0.81191 1.20574 1.21259 1.19842 0.91223 0.92822 0.92133 0.92442 0.89190 0.88868 0.89755 0.77229 0.90532 0.95248 0.85997 0.95293 0.99445 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.56 37.16 0.32 -1.62 16 2 C 0.09 1.19 3.76 -26.15 -0.10 1.09 16 3 H 0.10 1.35 7.69 -51.93 -0.40 0.95 16 4 O -0.37 -5.48 11.19 -35.23 -0.39 -5.87 16 5 C 0.04 0.56 7.67 38.41 0.29 0.85 16 6 C -0.16 -2.22 6.09 -24.53 -0.15 -2.37 16 7 C 0.11 1.56 1.14 -89.10 -0.10 1.46 16 8 O -0.55 -7.72 11.21 -35.23 -0.39 -8.12 16 9 C 0.04 0.67 4.58 -3.83 -0.02 0.65 16 10 N -0.69 -13.82 6.08 -115.06 -0.70 -14.52 16 11 C 0.19 4.99 5.44 -4.98 -0.03 4.97 16 12 C -0.52 -14.35 9.32 -34.44 -0.32 -14.67 16 13 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 16 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.06 0.78 7.87 -51.93 -0.41 0.38 16 23 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 24 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.09 1.42 7.87 -51.93 -0.41 1.01 16 26 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 27 H 0.38 4.58 7.70 45.56 0.35 4.93 16 28 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.32 6.06 7.34 -39.29 -0.29 5.77 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 32 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 272.13 15.07 4.10 4.10 Total: -1.00 -30.03 272.13 -6.36 -36.39 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.48 Total: 5.67 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.20 Total: -8.15 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.04 Total: -40.39 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.79 Total: -13.99 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.03 -6.36 -36.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227147466.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.528 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds