Wall clock time and date at job start Mon Mar 30 2020 03:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.86663 * 2 1 4 4 O 1.43742 * 109.87864 * 238.83905 * 2 1 3 5 5 C 1.44376 * 106.97690 * 267.08842 * 4 2 1 6 6 C 1.55353 * 103.49910 * 319.91073 * 5 4 2 7 7 C 1.54098 * 109.87942 * 121.00406 * 2 1 3 8 8 O 1.42905 * 110.48739 * 358.72269 * 7 2 1 9 9 C 1.52990 * 110.48928 * 236.20697 * 7 2 1 10 10 N 1.46900 * 109.47353 * 186.84586 * 9 7 2 11 11 C 1.46901 * 111.00119 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46948 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00455 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00093 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00307 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00285 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46999 * 89.99791 * 16 14 12 18 18 H 1.48502 * 109.47375 * 209.99862 * 16 14 12 19 19 H 1.48500 * 109.47035 * 329.99906 * 16 14 12 20 20 H 1.09003 * 109.47075 * 298.99044 * 1 2 3 21 21 H 1.08995 * 109.46843 * 58.99435 * 1 2 3 22 22 H 1.09003 * 109.46995 * 178.99211 * 1 2 3 23 23 H 1.09000 * 110.62015 * 78.43297 * 5 4 2 24 24 H 1.08995 * 110.62282 * 201.28676 * 5 4 2 25 25 H 1.09006 * 110.95676 * 278.92041 * 6 5 4 26 26 H 1.08994 * 111.00741 * 155.20972 * 6 5 4 27 27 H 0.96696 * 114.00036 * 178.15373 * 8 7 2 28 28 H 1.09008 * 109.47251 * 306.84118 * 9 7 2 29 29 H 1.09003 * 109.47841 * 66.84653 * 9 7 2 30 30 H 1.00903 * 110.99924 * 303.95428 * 10 9 7 31 31 H 1.09000 * 109.47331 * 299.99840 * 11 10 9 32 32 H 1.08997 * 109.46866 * 60.00512 * 11 10 9 33 33 H 0.96997 * 120.00510 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6995 -1.1567 5 6 2.2281 -2.0723 -0.7620 6 6 2.8347 -1.9515 0.6632 7 6 2.0541 -0.7465 1.2421 8 8 0.9656 -1.1976 2.0507 9 6 2.9858 0.1546 2.0549 10 7 3.5993 -0.6254 3.1381 11 6 4.5029 0.2091 3.9412 12 6 5.1125 -0.6236 5.0394 13 1 4.8541 -1.6681 5.1319 14 6 5.9992 -0.0517 5.9268 15 7 6.3136 1.2204 5.8147 16 14 6.7543 -1.0837 7.2886 17 1 8.0180 -1.6946 6.8039 18 1 7.0401 -0.2210 8.4630 19 1 5.8050 -2.1560 7.6814 20 1 -0.3633 0.4981 0.8989 21 1 -0.3633 0.5294 -0.8808 22 1 -0.3633 -1.0275 -0.0181 23 1 1.2814 -2.6117 -0.7320 24 1 2.9275 -2.5639 -1.4382 25 1 3.9023 -1.7367 0.6156 26 1 2.6463 -2.8532 1.2457 27 1 1.2372 -1.6987 2.8319 28 1 3.7664 0.5505 1.4052 29 1 2.4139 0.9794 2.4801 30 1 2.8944 -1.0566 3.7172 31 1 5.2940 0.6051 3.3043 32 1 3.9419 1.0345 4.3794 33 1 6.9377 1.6227 6.4388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227147466.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:30 Heat of formation + Delta-G solvation = -126.634756 kcal Electronic energy + Delta-G solvation = -14953.472004 eV Core-core repulsion = 12398.804548 eV Total energy + Delta-G solvation = -2554.667456 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.19649 -37.84297 -36.29078 -34.43295 -32.29166 -32.02167 -29.57885 -27.44867 -24.77721 -23.63706 -22.49044 -21.42722 -18.81930 -17.71524 -17.52427 -17.32928 -16.50482 -16.18151 -15.43628 -15.11205 -14.86644 -14.32005 -14.25530 -13.90512 -13.71976 -13.34046 -12.87811 -12.81053 -12.70787 -12.59729 -12.38725 -12.12486 -12.06998 -11.57674 -11.22791 -10.90420 -10.67731 -10.63879 -9.23282 -8.24383 -6.36091 1.41970 1.43508 1.54583 2.38842 2.90233 3.07189 3.09622 3.26445 3.69169 3.78375 3.96377 4.18998 4.30436 4.38190 4.48730 4.64325 4.68800 4.72629 4.86592 5.04735 5.07374 5.12307 5.17357 5.21219 5.36230 5.57724 5.84517 5.96792 6.32523 6.60626 6.72346 6.84764 7.35246 8.87403 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.057426 B = 0.006082 C = 0.005981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.466331 B = 4602.779555 C = 4680.750222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.081 3.919 3 H 0.098 0.902 4 O -0.387 6.387 5 C 0.046 3.954 6 C -0.161 4.161 7 C 0.116 3.884 8 O -0.554 6.554 9 C 0.042 3.958 10 N -0.676 5.676 11 C 0.208 3.792 12 C -0.535 4.535 13 H 0.069 0.931 14 C 0.000 4.000 15 N -0.936 5.936 16 Si 0.975 3.025 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.260 1.260 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.071 0.929 24 H 0.108 0.892 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.387 0.613 28 H 0.066 0.934 29 H 0.023 0.977 30 H 0.335 0.665 31 H -0.001 1.001 32 H -0.039 1.039 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.779 -6.045 -9.615 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.023 3.977 3 H 0.116 0.884 4 O -0.307 6.307 5 C -0.030 4.030 6 C -0.198 4.198 7 C 0.075 3.925 8 O -0.362 6.362 9 C -0.088 4.088 10 N -0.307 5.307 11 C 0.080 3.920 12 C -0.573 4.573 13 H 0.087 0.913 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.799 3.201 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.184 1.184 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.126 0.874 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.237 0.763 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.153 0.847 31 H 0.017 0.983 32 H -0.022 1.022 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.492 -5.762 -10.603 15.353 hybrid contribution 0.387 0.269 1.915 1.972 sum -9.105 -5.494 -8.688 13.731 Atomic orbital electron populations 1.21855 0.93563 1.02781 1.02067 1.22760 0.95832 0.96166 0.82987 0.88382 1.88885 1.86357 1.22247 1.33185 1.23763 1.00637 0.83360 0.95256 1.23621 1.00626 0.98666 0.96937 1.22387 0.85704 0.93636 0.90813 1.86472 1.32925 1.75688 1.41080 1.22543 0.96568 0.95059 0.94679 1.60558 1.21836 1.33687 1.14626 1.19206 0.90647 0.91000 0.91106 1.21533 1.26095 0.97169 1.12494 0.91267 1.25982 0.97003 0.96204 1.00641 1.70094 1.35412 1.13218 1.38866 0.85300 0.78779 0.78331 0.77684 1.19929 1.20908 1.18445 0.91429 0.91645 0.92169 0.91100 0.87383 0.90647 0.88654 0.76262 0.91523 0.95890 0.84729 0.98277 1.02177 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 8.56 71.98 0.62 -2.80 16 2 C 0.08 2.16 3.76 30.97 0.12 2.28 16 3 H 0.10 2.61 7.69 -2.39 -0.02 2.59 16 4 O -0.39 -10.72 11.19 -148.98 -1.67 -12.39 16 5 C 0.05 1.04 7.67 72.79 0.56 1.60 16 6 C -0.16 -4.16 6.09 32.02 0.19 -3.97 16 7 C 0.12 3.24 1.14 -9.81 -0.01 3.23 16 8 O -0.55 -14.40 11.21 -148.98 -1.67 -16.07 16 9 C 0.04 1.45 4.58 86.30 0.40 1.85 16 10 N -0.68 -27.26 6.08 -517.94 -3.15 -30.41 16 11 C 0.21 10.95 5.44 85.56 0.47 11.42 16 12 C -0.53 -29.76 9.32 25.60 0.24 -29.52 16 13 H 0.07 3.68 7.81 -2.91 -0.02 3.65 16 14 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 15 N -0.94 -56.28 13.29 21.45 0.28 -55.99 16 16 Si 0.97 43.49 29.54 68.60 2.03 45.51 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 20 H 0.07 1.61 7.85 -2.39 -0.02 1.59 16 21 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.06 1.42 7.87 -2.39 -0.02 1.40 16 23 H 0.07 1.45 8.11 -2.39 -0.02 1.43 16 24 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.07 2.24 7.87 -2.38 -0.02 2.22 16 26 H 0.09 2.25 8.08 -2.39 -0.02 2.23 16 27 H 0.39 8.59 7.70 -74.06 -0.57 8.02 16 28 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.33 12.29 7.34 -89.69 -0.66 11.63 16 31 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H -0.04 -2.25 8.14 -2.39 -0.02 -2.27 16 33 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -63.44 272.13 -1.27 -64.70 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -0.13 Total: 20.10 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 3.04 Total: -15.46 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -2.86 Total: -86.40 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -3.34 Total: -28.46 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -63.44 -1.27 -64.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227147466.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.931 kcal (2) G-P(sol) polarization free energy of solvation -63.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds