Wall clock time and date at job start Mon Mar 30 2020 02:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81403 * 102.99957 * 2 1 4 4 C 1.53008 * 115.55181 * 65.71857 * 3 2 1 5 5 N 1.46906 * 109.46861 * 30.92102 * 4 3 2 6 6 C 1.46897 * 110.99653 * 185.09894 * 5 4 3 7 7 H 1.08999 * 109.46890 * 324.99514 * 6 5 4 8 8 C 1.52996 * 109.47390 * 85.00044 * 6 5 4 9 9 C 1.50701 * 109.46805 * 205.00073 * 6 5 4 10 10 H 1.07996 * 120.00024 * 359.97438 * 9 6 5 11 11 C 1.37877 * 119.99778 * 179.97438 * 9 6 5 12 12 N 1.31509 * 120.00402 * 359.97438 * 11 9 6 13 13 Si 1.86805 * 119.99928 * 179.97438 * 11 9 6 14 14 H 1.48506 * 109.46912 * 59.99773 * 13 11 9 15 15 H 1.48495 * 109.47104 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47390 * 300.00401 * 13 11 9 17 17 C 1.52998 * 117.49853 * 211.38188 * 3 2 1 18 18 C 1.52995 * 117.49926 * 280.04509 * 3 2 1 19 19 H 1.08997 * 109.46975 * 294.96660 * 1 2 3 20 20 H 1.08996 * 109.46749 * 54.95944 * 1 2 3 21 21 H 1.08992 * 109.46911 * 174.96076 * 1 2 3 22 22 H 1.08994 * 109.47053 * 150.91936 * 4 3 2 23 23 H 1.08992 * 109.46637 * 270.92166 * 4 3 2 24 24 H 1.00894 * 111.00173 * 61.13962 * 5 4 3 25 25 H 1.08999 * 109.47537 * 59.99865 * 8 6 5 26 26 H 1.09000 * 109.47179 * 180.02562 * 8 6 5 27 27 H 1.08996 * 109.47065 * 299.99336 * 8 6 5 28 28 H 0.97003 * 120.00492 * 180.02562 * 12 11 9 29 29 H 1.08997 * 117.50202 * 214.99775 * 17 3 2 30 30 H 1.08994 * 117.49937 * 0.03342 * 17 3 2 31 31 H 1.08998 * 117.50019 * 359.97438 * 18 3 2 32 32 H 1.09001 * 117.49974 * 144.97513 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.8174 2.5383 1.2583 5 7 1.8736 1.6419 2.4208 6 6 1.3757 2.3140 3.6283 7 1 1.6539 3.3675 3.5986 8 6 -0.1481 2.1905 3.6893 9 6 1.9812 1.6688 4.8482 10 1 2.6669 0.8419 4.7375 11 6 1.6597 2.1342 6.1056 12 7 0.8251 3.1416 6.2404 13 14 2.4097 1.3340 7.6178 14 1 3.8888 1.4528 7.5585 15 1 1.9075 2.0143 8.8384 16 1 2.0298 -0.1010 7.6584 17 6 3.5099 2.1952 -0.7067 18 6 2.1503 2.5091 -1.3363 19 1 -0.3633 0.4338 0.9316 20 1 -0.3633 0.5900 -0.8414 21 1 -0.3633 -1.0236 -0.0903 22 1 2.5024 3.3725 1.4094 23 1 0.8026 2.9180 1.1410 24 1 2.8089 1.2909 2.5619 25 1 -0.4264 1.1370 3.7190 26 1 -0.5176 2.6896 4.5851 27 1 -0.5860 2.6572 2.8071 28 1 0.5991 3.4693 7.1250 29 1 4.0687 3.0257 -0.2754 30 1 4.1116 1.4147 -1.1721 31 1 1.8584 1.9349 -2.2155 32 1 1.8145 3.5459 -1.3191 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227936003.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:28 Heat of formation + Delta-G solvation = 6.269332 kcal Electronic energy + Delta-G solvation = -12738.578949 eV Core-core repulsion = 10632.427518 eV Total energy + Delta-G solvation = -2106.151431 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.93250 -36.97348 -34.26486 -30.71532 -29.57996 -27.45916 -26.16520 -23.37088 -21.85858 -21.72151 -18.64970 -17.30342 -16.88434 -16.04937 -15.79670 -15.42808 -15.02217 -14.45054 -14.13304 -14.01385 -13.79914 -13.37725 -12.91812 -12.71051 -12.70026 -12.47433 -12.33657 -12.20076 -12.06160 -11.52403 -11.12105 -10.90354 -10.57527 -10.53568 -9.03176 -8.25196 -8.13651 -6.27216 0.99534 1.41758 1.43717 1.51384 1.78403 2.41202 2.74812 3.14986 3.45872 3.87420 3.96233 4.11331 4.43731 4.48273 4.62062 4.65515 4.70945 4.76528 4.86438 4.95167 5.01630 5.07073 5.20557 5.21379 5.46403 5.67037 5.85462 6.22068 6.49033 6.78294 7.00478 7.43185 8.91953 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.042129 B = 0.007503 C = 0.007399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.473240 B = 3730.721207 C = 3783.473343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.212 6.212 3 C -0.127 4.127 4 C 0.101 3.899 5 N -0.666 5.666 6 C 0.216 3.784 7 H -0.035 1.035 8 C -0.108 4.108 9 C -0.535 4.535 10 H 0.057 0.943 11 C 0.013 3.987 12 N -0.919 5.919 13 Si 0.961 3.039 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.272 1.272 17 C -0.134 4.134 18 C -0.138 4.138 19 H 0.061 0.939 20 H 0.083 0.917 21 H 0.106 0.894 22 H 0.023 0.977 23 H 0.057 0.943 24 H 0.332 0.668 25 H 0.026 0.974 26 H 0.055 0.945 27 H 0.018 0.982 28 H 0.262 0.738 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 -2.127 -13.546 13.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S 0.017 5.983 3 C -0.237 4.237 4 C -0.032 4.032 5 N -0.297 5.297 6 C 0.108 3.892 7 H -0.017 1.017 8 C -0.166 4.166 9 C -0.573 4.573 10 H 0.076 0.924 11 C -0.186 4.186 12 N -0.558 5.558 13 Si 0.787 3.213 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.197 1.197 17 C -0.172 4.172 18 C -0.178 4.178 19 H 0.080 0.920 20 H 0.102 0.898 21 H 0.124 0.876 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.149 0.851 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.134 0.866 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.539 -3.236 -13.529 13.996 hybrid contribution 0.024 1.497 1.407 2.055 sum 1.563 -1.740 -12.122 12.345 Atomic orbital electron populations 1.23270 0.93826 1.06284 1.04615 1.85945 1.08554 1.06816 1.96957 1.23654 1.08787 0.94995 0.96303 1.21426 0.99339 0.92786 0.89601 1.60735 1.28658 1.36798 1.03468 1.18888 0.92818 0.90436 0.87074 1.01723 1.21493 0.97582 0.98702 0.98839 1.21541 1.26957 1.17055 0.91771 0.92436 1.25718 0.95494 0.95459 1.01905 1.70012 1.35246 1.26711 1.23854 0.85564 0.78783 0.78639 0.78347 1.19630 1.20843 1.19734 1.23111 0.89979 1.02875 1.01251 1.23357 0.99550 1.01284 0.93614 0.91982 0.89763 0.87555 0.95912 0.92498 0.85053 0.95441 0.92581 0.96322 0.92852 0.87603 0.87292 0.86594 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.04 10.75 113.37 1.22 -1.82 16 2 S -0.21 -6.50 21.34 -56.49 -1.21 -7.71 16 3 C -0.13 -3.68 2.41 -10.79 -0.03 -3.70 16 4 C 0.10 3.63 5.63 86.30 0.49 4.12 16 5 N -0.67 -28.83 5.27 -495.45 -2.61 -31.44 16 6 C 0.22 11.23 2.60 44.17 0.11 11.34 16 7 H -0.03 -1.99 7.86 -2.39 -0.02 -2.01 16 8 C -0.11 -5.46 9.19 71.98 0.66 -4.80 16 9 C -0.53 -29.95 8.59 25.60 0.22 -29.73 16 10 H 0.06 3.18 7.62 -2.91 -0.02 3.16 16 11 C 0.01 0.74 5.30 84.66 0.45 1.19 16 12 N -0.92 -53.55 11.32 21.45 0.24 -53.30 16 13 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 C -0.13 -3.10 9.94 30.62 0.30 -2.80 16 18 C -0.14 -2.97 10.02 30.62 0.31 -2.66 16 19 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 20 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 21 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 22 H 0.02 0.84 7.88 -2.39 -0.02 0.82 16 23 H 0.06 2.12 7.33 -2.39 -0.02 2.11 16 24 H 0.33 14.66 8.28 -89.70 -0.74 13.92 16 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 27 H 0.02 0.83 7.39 -2.39 -0.02 0.81 16 28 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 29 H 0.11 2.35 8.04 -2.39 -0.02 2.33 16 30 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.12 2.17 8.14 -2.39 -0.02 2.16 16 32 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -60.28 278.99 2.53 -57.75 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.34 Total: 17.41 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 3.73 Total: -28.86 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -2.37 Total: -84.75 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -6.50 SS G_CDS: -1.21 Total: -7.71 kcal Total: -60.28 2.53 -57.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227936003.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.017 kcal (2) G-P(sol) polarization free energy of solvation -60.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds