Wall clock time and date at job start Mon Mar 30 2020 02:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81404 * 103.00002 * 2 1 4 4 C 1.53003 * 115.54916 * 65.51573 * 3 2 1 5 5 N 1.46900 * 109.47148 * 35.18126 * 4 3 2 6 6 C 1.46901 * 111.00278 * 176.04624 * 5 4 3 7 7 H 1.08999 * 109.46690 * 34.99655 * 6 5 4 8 8 C 1.52998 * 109.46976 * 275.00343 * 6 5 4 9 9 C 1.50694 * 109.47316 * 155.00258 * 6 5 4 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 6 5 11 11 C 1.37872 * 120.00175 * 179.72659 * 9 6 5 12 12 N 1.31517 * 119.99923 * 0.27071 * 11 9 6 13 13 Si 1.86802 * 120.00398 * 180.27705 * 11 9 6 14 14 H 1.48501 * 109.46934 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47625 * 119.99771 * 13 11 9 16 16 H 1.48505 * 109.46750 * 239.99963 * 13 11 9 17 17 C 1.52998 * 117.52146 * 211.21536 * 3 2 1 18 18 C 1.52998 * 117.49904 * 279.84911 * 3 2 1 19 19 H 1.08996 * 109.46994 * 294.94781 * 1 2 3 20 20 H 1.08997 * 109.47260 * 54.95269 * 1 2 3 21 21 H 1.09002 * 109.46791 * 174.94718 * 1 2 3 22 22 H 1.09006 * 109.46971 * 275.18411 * 4 3 2 23 23 H 1.08993 * 109.47348 * 155.18554 * 4 3 2 24 24 H 1.00906 * 110.99611 * 52.09043 * 5 4 3 25 25 H 1.09002 * 109.47210 * 59.99912 * 8 6 5 26 26 H 1.08998 * 109.47105 * 179.97438 * 8 6 5 27 27 H 1.09006 * 109.47196 * 299.99790 * 8 6 5 28 28 H 0.97003 * 120.00132 * 179.97438 * 12 11 9 29 29 H 1.08995 * 117.50089 * 214.97513 * 17 3 2 30 30 H 1.09002 * 117.49534 * 359.97438 * 17 3 2 31 31 H 1.08995 * 117.50030 * 359.97012 * 18 3 2 32 32 H 1.09005 * 117.50117 * 144.97155 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.8130 2.5392 1.2563 5 7 1.9628 1.6732 2.4334 6 6 1.6684 2.4097 3.6698 7 1 0.8719 3.1299 3.4827 8 6 2.9249 3.1484 4.1349 9 6 1.2300 1.4421 4.7387 10 1 1.1759 0.3856 4.5213 11 6 0.9038 1.9049 5.9958 12 7 0.9701 3.1914 6.2606 13 14 0.3678 0.7046 7.3230 14 1 0.3757 -0.6755 6.7748 15 1 1.3046 0.7865 8.4722 16 1 -1.0037 1.0487 7.7768 17 6 3.5117 2.1954 -0.7032 18 6 2.1548 2.5081 -1.3371 19 1 -0.3633 0.4334 0.9317 20 1 -0.3633 0.5901 -0.8413 21 1 -0.3633 -1.0237 -0.0905 22 1 0.7733 2.8541 1.1669 23 1 2.4501 3.4166 1.3673 24 1 2.8849 1.2647 2.4667 25 1 3.2420 3.8484 3.3618 26 1 2.7063 3.6953 5.0521 27 1 3.7215 2.4283 4.3220 28 1 0.7403 3.5170 7.1449 29 1 4.0688 3.0264 -0.2709 30 1 4.1156 1.4146 -1.1657 31 1 1.8658 1.9332 -2.2169 32 1 1.8188 3.5450 -1.3219 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227936012.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:30 Heat of formation + Delta-G solvation = 23.613696 kcal Electronic energy + Delta-G solvation = -12712.088463 eV Core-core repulsion = 10606.689140 eV Total energy + Delta-G solvation = -2105.399323 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.70124 -35.28603 -32.26514 -28.92860 -28.33630 -25.18796 -24.50459 -22.40365 -20.64687 -20.08124 -16.64025 -15.94814 -14.95853 -14.72231 -14.09838 -13.79920 -13.45450 -13.10865 -12.85550 -12.56986 -12.03482 -11.66346 -11.61226 -11.27361 -10.98438 -10.85932 -10.71712 -10.42025 -10.12307 -9.96046 -9.76099 -9.38640 -8.94877 -8.33144 -7.27096 -6.95661 -5.94972 -3.97387 2.12879 2.91706 3.33971 3.41610 3.47817 3.80376 4.46947 4.74274 4.96422 5.02861 5.36755 5.49517 5.60199 5.62533 5.65909 5.80932 5.90737 6.10645 6.16243 6.17550 6.29619 6.71371 6.87165 7.13487 7.39703 7.78013 7.94367 8.31927 8.61891 8.67671 9.11413 9.68001 11.12272 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.039605 B = 0.008036 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.812058 B = 3483.314536 C = 3939.204263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.187 6.187 3 C -0.107 4.107 4 C 0.097 3.903 5 N -0.668 5.668 6 C 0.210 3.790 7 H 0.030 0.970 8 C -0.169 4.169 9 C -0.489 4.489 10 H 0.064 0.936 11 C 0.053 3.947 12 N -0.900 5.900 13 Si 0.896 3.104 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.286 1.286 17 C -0.142 4.142 18 C -0.161 4.161 19 H 0.088 0.912 20 H 0.065 0.935 21 H 0.091 0.909 22 H 0.064 0.936 23 H 0.027 0.973 24 H 0.330 0.670 25 H 0.002 0.998 26 H 0.088 0.912 27 H 0.028 0.972 28 H 0.258 0.742 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.804 -1.593 -12.822 13.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S 0.043 5.957 3 C -0.218 4.218 4 C -0.035 4.035 5 N -0.298 5.298 6 C 0.102 3.898 7 H 0.048 0.952 8 C -0.228 4.228 9 C -0.528 4.528 10 H 0.082 0.918 11 C -0.147 4.147 12 N -0.540 5.540 13 Si 0.724 3.276 14 H -0.197 1.197 15 H -0.213 1.213 16 H -0.212 1.212 17 C -0.181 4.181 18 C -0.202 4.202 19 H 0.107 0.893 20 H 0.084 0.916 21 H 0.110 0.890 22 H 0.083 0.917 23 H 0.045 0.955 24 H 0.147 0.853 25 H 0.021 0.979 26 H 0.107 0.893 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.784 -2.667 -12.701 13.100 hybrid contribution -0.332 1.178 0.985 1.571 sum 1.451 -1.490 -11.717 11.900 Atomic orbital electron populations 1.23289 0.94992 1.05204 1.05363 1.85937 1.07113 1.05664 1.97016 1.23796 1.05875 0.95731 0.96395 1.21480 0.99859 0.93251 0.88949 1.60934 1.33804 1.33417 1.01687 1.19180 0.92761 0.92332 0.85539 0.95225 1.22433 0.99065 0.99334 1.01961 1.21205 1.42800 0.94271 0.94475 0.91754 1.24959 0.96033 0.95181 0.98530 1.69899 1.49894 1.12620 1.21582 0.86467 0.78014 0.81482 0.81602 1.19683 1.21257 1.21249 1.22979 0.90123 1.02714 1.02270 1.23237 1.00675 1.01065 0.95188 0.89272 0.91554 0.89045 0.91736 0.95536 0.85261 0.97851 0.89308 0.95312 0.93232 0.88152 0.88260 0.88154 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 10.75 101.05 1.09 -0.62 16 2 S -0.19 -2.96 21.45 -107.50 -2.31 -5.27 16 3 C -0.11 -1.63 2.29 -90.62 -0.21 -1.83 16 4 C 0.10 1.76 5.62 -3.82 -0.02 1.74 16 5 N -0.67 -14.34 5.37 -107.95 -0.58 -14.92 16 6 C 0.21 5.31 2.58 -68.87 -0.18 5.13 16 7 H 0.03 0.83 7.85 -51.93 -0.41 0.42 16 8 C -0.17 -4.11 8.93 37.16 0.33 -3.78 16 9 C -0.49 -13.66 8.84 -34.44 -0.30 -13.97 16 10 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 11 C 0.05 1.48 5.30 -17.82 -0.09 1.39 16 12 N -0.90 -26.02 11.31 55.43 0.63 -25.39 16 13 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 C -0.14 -1.80 9.94 -26.73 -0.27 -2.07 16 18 C -0.16 -1.95 10.02 -26.73 -0.27 -2.22 16 19 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 20 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 21 H 0.09 1.15 8.14 -51.92 -0.42 0.72 16 22 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 23 H 0.03 0.49 7.12 -51.93 -0.37 0.12 16 24 H 0.33 7.06 8.42 -39.29 -0.33 6.73 16 25 H 0.00 0.06 7.40 -51.93 -0.38 -0.33 16 26 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 27 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.10 1.22 8.05 -51.93 -0.42 0.80 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 279.38 15.07 4.21 4.21 Total: -1.00 -28.55 279.38 -8.14 -36.69 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.15 Total: 4.14 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 0.08 Total: -16.23 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.05 Total: -40.31 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.31 Total: -5.27 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.55 -8.14 -36.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227936012.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.301 kcal (2) G-P(sol) polarization free energy of solvation -28.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds