Wall clock time and date at job start Mon Mar 30 2020 02:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81404 * 103.00002 * 2 1 4 4 C 1.53003 * 115.54916 * 65.51573 * 3 2 1 5 5 N 1.46900 * 109.47148 * 35.18126 * 4 3 2 6 6 C 1.46901 * 111.00278 * 176.04624 * 5 4 3 7 7 H 1.08999 * 109.46690 * 34.99655 * 6 5 4 8 8 C 1.52998 * 109.46976 * 275.00343 * 6 5 4 9 9 C 1.50694 * 109.47316 * 155.00258 * 6 5 4 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 6 5 11 11 C 1.37872 * 120.00175 * 179.72659 * 9 6 5 12 12 N 1.31517 * 119.99923 * 0.27071 * 11 9 6 13 13 Si 1.86802 * 120.00398 * 180.27705 * 11 9 6 14 14 H 1.48501 * 109.46934 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47625 * 119.99771 * 13 11 9 16 16 H 1.48505 * 109.46750 * 239.99963 * 13 11 9 17 17 C 1.52998 * 117.52146 * 211.21536 * 3 2 1 18 18 C 1.52998 * 117.49904 * 279.84911 * 3 2 1 19 19 H 1.08996 * 109.46994 * 294.94781 * 1 2 3 20 20 H 1.08997 * 109.47260 * 54.95269 * 1 2 3 21 21 H 1.09002 * 109.46791 * 174.94718 * 1 2 3 22 22 H 1.09006 * 109.46971 * 275.18411 * 4 3 2 23 23 H 1.08993 * 109.47348 * 155.18554 * 4 3 2 24 24 H 1.00906 * 110.99611 * 52.09043 * 5 4 3 25 25 H 1.09002 * 109.47210 * 59.99912 * 8 6 5 26 26 H 1.08998 * 109.47105 * 179.97438 * 8 6 5 27 27 H 1.09006 * 109.47196 * 299.99790 * 8 6 5 28 28 H 0.97003 * 120.00132 * 179.97438 * 12 11 9 29 29 H 1.08995 * 117.50089 * 214.97513 * 17 3 2 30 30 H 1.09002 * 117.49534 * 359.97438 * 17 3 2 31 31 H 1.08995 * 117.50030 * 359.97012 * 18 3 2 32 32 H 1.09005 * 117.50117 * 144.97155 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.8130 2.5392 1.2563 5 7 1.9628 1.6732 2.4334 6 6 1.6684 2.4097 3.6698 7 1 0.8719 3.1299 3.4827 8 6 2.9249 3.1484 4.1349 9 6 1.2300 1.4421 4.7387 10 1 1.1759 0.3856 4.5213 11 6 0.9038 1.9049 5.9958 12 7 0.9701 3.1914 6.2606 13 14 0.3678 0.7046 7.3230 14 1 0.3757 -0.6755 6.7748 15 1 1.3046 0.7865 8.4722 16 1 -1.0037 1.0487 7.7768 17 6 3.5117 2.1954 -0.7032 18 6 2.1548 2.5081 -1.3371 19 1 -0.3633 0.4334 0.9317 20 1 -0.3633 0.5901 -0.8413 21 1 -0.3633 -1.0237 -0.0905 22 1 0.7733 2.8541 1.1669 23 1 2.4501 3.4166 1.3673 24 1 2.8849 1.2647 2.4667 25 1 3.2420 3.8484 3.3618 26 1 2.7063 3.6953 5.0521 27 1 3.7215 2.4283 4.3220 28 1 0.7403 3.5170 7.1449 29 1 4.0688 3.0264 -0.2709 30 1 4.1156 1.4146 -1.1657 31 1 1.8658 1.9332 -2.2169 32 1 1.8188 3.5450 -1.3219 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227936012.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:30 Heat of formation + Delta-G solvation = 6.706166 kcal Electronic energy + Delta-G solvation = -12712.821629 eV Core-core repulsion = 10606.689140 eV Total energy + Delta-G solvation = -2106.132489 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.98967 -37.00651 -34.26046 -30.69515 -29.55429 -27.26096 -26.14976 -23.38708 -22.08847 -21.86303 -18.47585 -17.43426 -16.78509 -16.10639 -15.57308 -15.25095 -15.14223 -14.61533 -14.15787 -13.83220 -13.70485 -13.53998 -12.94867 -12.81852 -12.77519 -12.48743 -12.31412 -12.16770 -12.06514 -11.55316 -11.14092 -11.00014 -10.57421 -10.48491 -8.93226 -8.29476 -8.09164 -6.19550 0.96874 1.41185 1.43073 1.55804 1.76144 2.44230 2.74016 3.19051 3.47024 3.85912 3.94858 4.11920 4.42580 4.46903 4.61807 4.63834 4.70486 4.72276 4.83419 4.88731 4.94984 5.02759 5.10898 5.20388 5.40891 5.70036 5.83063 6.28594 6.67436 6.84111 6.96708 7.50541 8.96533 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.039605 B = 0.008036 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.812058 B = 3483.314536 C = 3939.204263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.215 6.215 3 C -0.129 4.129 4 C 0.102 3.898 5 N -0.668 5.668 6 C 0.216 3.784 7 H -0.001 1.001 8 C -0.155 4.155 9 C -0.508 4.508 10 H 0.053 0.947 11 C 0.007 3.993 12 N -0.924 5.924 13 Si 0.959 3.041 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.282 1.282 17 C -0.132 4.132 18 C -0.137 4.137 19 H 0.060 0.940 20 H 0.085 0.915 21 H 0.107 0.893 22 H 0.051 0.949 23 H 0.028 0.972 24 H 0.331 0.669 25 H 0.023 0.977 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.105 -1.969 -13.890 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S 0.014 5.986 3 C -0.240 4.240 4 C -0.030 4.030 5 N -0.298 5.298 6 C 0.107 3.893 7 H 0.017 0.983 8 C -0.215 4.215 9 C -0.547 4.547 10 H 0.071 0.929 11 C -0.191 4.191 12 N -0.565 5.565 13 Si 0.785 3.215 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.208 1.208 17 C -0.170 4.170 18 C -0.178 4.178 19 H 0.079 0.921 20 H 0.104 0.896 21 H 0.125 0.875 22 H 0.070 0.930 23 H 0.046 0.954 24 H 0.149 0.851 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.088 -3.045 -13.787 14.273 hybrid contribution -0.434 1.322 1.268 1.883 sum 1.655 -1.723 -12.519 12.745 Atomic orbital electron populations 1.23274 0.93757 1.06383 1.04613 1.85984 1.08626 1.06945 1.97009 1.23638 1.08937 0.94915 0.96495 1.21411 0.99233 0.93227 0.89092 1.60790 1.33859 1.33800 1.01373 1.18931 0.92123 0.91480 0.86770 0.98345 1.22234 0.98662 0.99317 1.01251 1.21454 1.43383 0.94159 0.95665 0.92853 1.25709 0.96003 0.96775 1.00563 1.70017 1.50289 1.14053 1.22117 0.85486 0.77706 0.79386 0.78910 1.19408 1.20591 1.20763 1.23098 0.89921 1.02879 1.01139 1.23343 0.99584 1.01322 0.93505 0.92089 0.89620 0.87478 0.93034 0.95438 0.85122 0.95756 0.91977 0.95080 0.93081 0.87518 0.87248 0.86595 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.07 10.75 113.37 1.22 -1.85 16 2 S -0.22 -6.56 21.45 -56.49 -1.21 -7.77 16 3 C -0.13 -3.70 2.29 -10.79 -0.02 -3.72 16 4 C 0.10 3.66 5.62 86.30 0.48 4.14 16 5 N -0.67 -28.78 5.37 -495.46 -2.66 -31.44 16 6 C 0.22 11.10 2.58 44.17 0.11 11.21 16 7 H 0.00 -0.08 7.85 -2.39 -0.02 -0.10 16 8 C -0.16 -7.59 8.93 71.98 0.64 -6.95 16 9 C -0.51 -28.77 8.84 25.60 0.23 -28.54 16 10 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 11 C 0.01 0.40 5.30 84.65 0.45 0.85 16 12 N -0.92 -53.95 11.31 21.45 0.24 -53.71 16 13 Si 0.96 44.80 29.54 68.60 2.03 46.83 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 17 C -0.13 -2.98 9.94 30.60 0.30 -2.68 16 18 C -0.14 -2.90 10.02 30.60 0.31 -2.60 16 19 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 20 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 21 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 22 H 0.05 1.95 8.13 -2.38 -0.02 1.93 16 23 H 0.03 0.98 7.12 -2.39 -0.02 0.96 16 24 H 0.33 14.09 8.42 -89.69 -0.76 13.34 16 25 H 0.02 1.04 7.40 -2.39 -0.02 1.02 16 26 H 0.06 3.39 6.06 -2.39 -0.01 3.37 16 27 H 0.03 1.45 8.13 -2.38 -0.02 1.43 16 28 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.11 2.29 8.05 -2.39 -0.02 2.27 16 30 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -60.74 279.38 2.45 -58.30 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.33 Total: 17.93 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 3.72 Total: -30.13 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.42 Total: -85.15 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -6.56 SS G_CDS: -1.21 Total: -7.77 kcal Total: -60.74 2.45 -58.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227936012.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.004 kcal (2) G-P(sol) polarization free energy of solvation -60.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds