Wall clock time and date at job start Mon Mar 30 2020 03:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46996 * 2 1 4 4 C 1.50699 * 109.47506 * 120.00715 * 2 1 3 5 5 H 1.07995 * 120.00137 * 119.99472 * 4 2 1 6 6 C 1.37876 * 119.99739 * 300.00246 * 4 2 1 7 7 N 1.31517 * 119.99991 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99946 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47053 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46912 * 119.99812 * 8 6 4 11 11 H 1.48499 * 109.47111 * 239.99638 * 8 6 4 12 12 N 1.46897 * 109.46965 * 240.00756 * 2 1 3 13 13 C 1.46900 * 111.00329 * 84.99695 * 12 2 1 14 14 C 1.52998 * 109.47219 * 179.97438 * 13 12 2 15 15 O 1.42899 * 110.56762 * 302.67900 * 14 13 12 16 16 C 1.54517 * 110.51092 * 179.97438 * 14 13 12 17 17 C 1.54481 * 104.06349 * 241.35881 * 16 14 13 18 18 O 1.44422 * 104.80090 * 336.01700 * 17 16 14 19 19 C 1.44430 * 105.27579 * 40.51762 * 18 17 16 20 20 H 1.09007 * 109.46799 * 299.99100 * 1 2 3 21 21 H 1.08996 * 109.47250 * 59.99214 * 1 2 3 22 22 H 1.09006 * 109.47229 * 179.97438 * 1 2 3 23 23 H 0.97006 * 119.99740 * 180.02562 * 7 6 4 24 24 H 1.00903 * 111.00520 * 321.04417 * 12 2 1 25 25 H 1.09003 * 109.46916 * 60.00155 * 13 12 2 26 26 H 1.09004 * 109.46899 * 300.00108 * 13 12 2 27 27 H 0.96700 * 113.99601 * 57.31887 * 15 14 13 28 28 H 1.08996 * 110.50794 * 0.02562 * 16 14 13 29 29 H 1.08995 * 110.50736 * 122.56907 * 16 14 13 30 30 H 1.08996 * 110.37381 * 94.85453 * 17 16 14 31 31 H 1.09001 * 110.36878 * 217.19053 * 17 16 14 32 32 H 1.08996 * 110.37017 * 200.65474 * 19 18 17 33 33 H 1.09004 * 110.37276 * 78.31629 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 0.9436 0.8299 2.6034 8 14 2.3215 -1.1208 4.0078 9 1 3.1466 -2.2873 3.6035 10 1 3.1467 -0.1878 4.8164 11 1 1.1662 -1.5872 4.8159 12 7 2.0196 -0.6923 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5961 -0.5325 -3.5742 15 8 3.8752 -1.1114 -3.3084 16 6 2.6710 0.4089 -4.7972 17 6 1.6987 -0.2232 -5.8177 18 8 1.6266 -1.6165 -5.4444 19 6 1.5874 -1.6221 -4.0006 20 1 -0.3633 0.5137 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 0.7095 1.1614 3.4845 24 1 1.4496 -1.4978 -1.4103 25 1 2.7588 1.0464 -2.1182 26 1 1.0869 0.6165 -2.5524 27 1 3.8853 -1.7116 -2.5502 28 1 2.3425 1.4125 -4.5272 29 1 3.6845 0.4350 -5.1975 30 1 0.7155 0.2411 -5.7429 31 1 2.0915 -0.1213 -6.8294 32 1 1.8947 -2.5947 -3.6165 33 1 0.5870 -1.3723 -3.6472 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229620814.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:56 Heat of formation + Delta-G solvation = -99.331280 kcal Electronic energy + Delta-G solvation = -15054.738206 eV Core-core repulsion = 12501.254717 eV Total energy + Delta-G solvation = -2553.483488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.79240 -36.53401 -35.20729 -32.58679 -31.24760 -29.39067 -27.54381 -25.23874 -24.35168 -22.63124 -20.22676 -20.16709 -17.03889 -16.48393 -16.07755 -15.59004 -15.07870 -14.70019 -14.33771 -13.43501 -13.35718 -12.79856 -12.71612 -12.35068 -12.01925 -11.67703 -11.41673 -11.30621 -11.03879 -10.89017 -10.62984 -10.46722 -10.21599 -10.12074 -9.80464 -9.38376 -9.03367 -8.41699 -7.42443 -6.03751 -4.07450 3.29053 3.37041 3.42000 3.97445 4.37320 4.38881 4.64726 4.86796 4.91238 5.11131 5.28301 5.38878 5.46618 5.58816 5.70358 5.75341 5.96409 6.00693 6.09214 6.30417 6.60113 6.74515 6.74899 6.99836 7.24742 7.65095 7.80150 8.02562 8.18772 8.38624 8.50524 8.99533 9.58307 11.03415 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.056416 B = 0.006714 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.196474 B = 4169.081408 C = 4328.922891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.496 4.496 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.685 5.685 13 C 0.039 3.961 14 C 0.109 3.891 15 O -0.550 6.550 16 C -0.145 4.145 17 C 0.046 3.954 18 O -0.374 6.374 19 C 0.020 3.980 20 H 0.090 0.910 21 H 0.004 0.996 22 H 0.028 0.972 23 H 0.260 0.740 24 H 0.323 0.677 25 H 0.076 0.924 26 H 0.029 0.971 27 H 0.389 0.611 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 -1.161 -11.916 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.315 5.315 13 C -0.092 4.092 14 C 0.067 3.933 15 O -0.358 6.358 16 C -0.183 4.183 17 C -0.031 4.031 18 O -0.293 6.293 19 C -0.057 4.057 20 H 0.109 0.891 21 H 0.023 0.977 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.139 0.861 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.239 0.761 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.925 -0.790 -12.255 12.315 hybrid contribution -0.973 -0.343 1.372 1.717 sum -0.048 -1.133 -10.882 10.941 Atomic orbital electron populations 1.22437 1.00597 0.99260 1.00580 1.19178 0.89642 0.94479 0.86219 0.94775 1.21174 1.30291 1.12506 0.89523 0.91801 1.24962 0.95279 0.95192 0.99142 1.69892 1.37312 1.23192 1.23337 0.86431 0.78503 0.79653 0.82755 1.19698 1.21116 1.21193 1.60803 1.57979 1.09150 1.03558 1.22565 0.99039 0.96640 0.90907 1.22510 0.84382 0.92193 0.94252 1.86394 1.29557 1.65541 1.54294 1.22941 1.01755 0.99001 0.94623 1.23408 0.98328 0.82405 0.98996 1.89109 1.95229 1.24213 1.20729 1.24198 0.99082 1.00944 0.81471 0.89111 0.97684 0.95271 0.93062 0.86078 0.90543 0.95274 0.76149 0.89601 0.89395 0.92278 0.89065 0.88426 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.94 37.16 0.33 -3.62 16 2 C 0.21 5.16 2.57 -68.87 -0.18 4.98 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.52 16 4 C -0.50 -13.39 8.84 -34.44 -0.30 -13.69 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -25.36 11.32 55.43 0.63 -24.73 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 N -0.68 -13.54 5.59 -107.95 -0.60 -14.14 16 13 C 0.04 0.67 4.42 -3.82 -0.02 0.65 16 14 C 0.11 1.63 1.25 -89.05 -0.11 1.52 16 15 O -0.55 -8.99 13.01 -35.23 -0.46 -9.45 16 16 C -0.15 -1.85 6.54 -25.16 -0.16 -2.02 16 17 C 0.05 0.54 7.63 37.93 0.29 0.83 16 18 O -0.37 -5.56 11.65 -35.23 -0.41 -5.97 16 19 C 0.02 0.29 6.05 37.93 0.23 0.52 16 20 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 21 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 22 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 23 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.32 5.97 7.63 -39.29 -0.30 5.67 16 25 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 26 H 0.03 0.49 7.38 -51.93 -0.38 0.11 16 27 H 0.39 5.90 8.46 45.56 0.39 6.28 16 28 H 0.09 0.98 7.73 -51.93 -0.40 0.58 16 29 H 0.09 1.13 8.00 -51.93 -0.42 0.72 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.33 8.09 -51.93 -0.42 0.91 16 33 H 0.06 0.89 7.83 -51.93 -0.41 0.48 16 LS Contribution 269.00 15.07 4.05 4.05 Total: -1.00 -29.08 269.00 -6.11 -35.19 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -4.28 Total: 8.31 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -0.02 Total: -9.44 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.02 Total: -38.87 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.87 Total: -15.42 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.08 -6.11 -35.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229620814.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.139 kcal (2) G-P(sol) polarization free energy of solvation -29.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds