Wall clock time and date at job start Mon Mar 30 2020 03:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46996 * 2 1 4 4 C 1.50699 * 109.47506 * 120.00715 * 2 1 3 5 5 H 1.07995 * 120.00137 * 119.99472 * 4 2 1 6 6 C 1.37876 * 119.99739 * 300.00246 * 4 2 1 7 7 N 1.31517 * 119.99991 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99946 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47053 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46912 * 119.99812 * 8 6 4 11 11 H 1.48499 * 109.47111 * 239.99638 * 8 6 4 12 12 N 1.46897 * 109.46965 * 240.00756 * 2 1 3 13 13 C 1.46900 * 111.00329 * 84.99695 * 12 2 1 14 14 C 1.52998 * 109.47219 * 179.97438 * 13 12 2 15 15 O 1.42899 * 110.56762 * 302.67900 * 14 13 12 16 16 C 1.54517 * 110.51092 * 179.97438 * 14 13 12 17 17 C 1.54481 * 104.06349 * 241.35881 * 16 14 13 18 18 O 1.44422 * 104.80090 * 336.01700 * 17 16 14 19 19 C 1.44430 * 105.27579 * 40.51762 * 18 17 16 20 20 H 1.09007 * 109.46799 * 299.99100 * 1 2 3 21 21 H 1.08996 * 109.47250 * 59.99214 * 1 2 3 22 22 H 1.09006 * 109.47229 * 179.97438 * 1 2 3 23 23 H 0.97006 * 119.99740 * 180.02562 * 7 6 4 24 24 H 1.00903 * 111.00520 * 321.04417 * 12 2 1 25 25 H 1.09003 * 109.46916 * 60.00155 * 13 12 2 26 26 H 1.09004 * 109.46899 * 300.00108 * 13 12 2 27 27 H 0.96700 * 113.99601 * 57.31887 * 15 14 13 28 28 H 1.08996 * 110.50794 * 0.02562 * 16 14 13 29 29 H 1.08995 * 110.50736 * 122.56907 * 16 14 13 30 30 H 1.08996 * 110.37381 * 94.85453 * 17 16 14 31 31 H 1.09001 * 110.36878 * 217.19053 * 17 16 14 32 32 H 1.08996 * 110.37017 * 200.65474 * 19 18 17 33 33 H 1.09004 * 110.37276 * 78.31629 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 0.9436 0.8299 2.6034 8 14 2.3215 -1.1208 4.0078 9 1 3.1466 -2.2873 3.6035 10 1 3.1467 -0.1878 4.8164 11 1 1.1662 -1.5872 4.8159 12 7 2.0196 -0.6923 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5961 -0.5325 -3.5742 15 8 3.8752 -1.1114 -3.3084 16 6 2.6710 0.4089 -4.7972 17 6 1.6987 -0.2232 -5.8177 18 8 1.6266 -1.6165 -5.4444 19 6 1.5874 -1.6221 -4.0006 20 1 -0.3633 0.5137 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 0.7095 1.1614 3.4845 24 1 1.4496 -1.4978 -1.4103 25 1 2.7588 1.0464 -2.1182 26 1 1.0869 0.6165 -2.5524 27 1 3.8853 -1.7116 -2.5502 28 1 2.3425 1.4125 -4.5272 29 1 3.6845 0.4350 -5.1975 30 1 0.7155 0.2411 -5.7429 31 1 2.0915 -0.1213 -6.8294 32 1 1.8947 -2.5947 -3.6165 33 1 0.5870 -1.3723 -3.6472 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229620814.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:56 Heat of formation + Delta-G solvation = -122.408699 kcal Electronic energy + Delta-G solvation = -15055.738918 eV Core-core repulsion = 12501.254717 eV Total energy + Delta-G solvation = -2554.484200 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.93711 -37.99088 -36.71709 -34.43956 -32.52875 -30.82819 -28.94678 -27.25406 -25.76547 -23.75384 -22.07767 -21.35922 -18.66362 -17.88362 -17.24542 -17.03557 -16.60386 -16.18976 -15.74764 -15.06935 -14.90536 -14.18550 -14.04592 -13.73997 -13.52662 -13.24663 -12.90179 -12.83045 -12.55166 -12.40236 -12.33373 -12.16692 -12.05589 -11.55695 -11.21181 -10.93742 -10.51932 -10.49744 -9.07743 -8.10762 -6.21641 1.42534 1.45043 1.56684 2.43837 2.94009 3.18461 3.23181 3.38297 3.65376 3.82843 4.03963 4.18809 4.31841 4.53113 4.64357 4.65389 4.73073 4.78471 4.82726 4.87373 5.00815 5.06274 5.07334 5.38686 5.68629 5.72530 5.79032 6.24302 6.56543 6.73217 6.84767 6.92664 7.48528 8.95110 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.056416 B = 0.006714 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.196474 B = 4169.081408 C = 4328.922891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.217 3.783 3 H 0.001 0.999 4 C -0.514 4.514 5 H 0.058 0.942 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.284 1.284 11 H -0.281 1.281 12 N -0.683 5.683 13 C 0.045 3.955 14 C 0.108 3.892 15 O -0.562 6.562 16 C -0.145 4.145 17 C 0.043 3.957 18 O -0.392 6.392 19 C 0.023 3.977 20 H 0.061 0.939 21 H 0.026 0.974 22 H 0.034 0.966 23 H 0.260 0.740 24 H 0.333 0.667 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.391 0.609 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.059 -1.682 -12.716 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.019 0.981 4 C -0.552 4.552 5 H 0.077 0.923 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.207 1.207 12 N -0.314 5.314 13 C -0.085 4.085 14 C 0.067 3.933 15 O -0.370 6.370 16 C -0.183 4.183 17 C -0.033 4.033 18 O -0.311 6.311 19 C -0.054 4.054 20 H 0.080 0.920 21 H 0.045 0.955 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.150 0.850 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.241 0.759 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.118 0.882 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.822 -1.319 -13.076 13.168 hybrid contribution -0.930 -0.147 1.566 1.828 sum -0.108 -1.466 -11.510 11.603 Atomic orbital electron populations 1.22247 0.99809 0.99455 1.00190 1.18925 0.90129 0.92720 0.87406 0.98091 1.21494 1.30306 1.12503 0.90913 0.92332 1.25720 0.95489 0.95875 1.01968 1.70016 1.38168 1.24320 1.23930 0.85464 0.78016 0.78606 0.79254 1.19156 1.21012 1.20682 1.60600 1.57861 1.09598 1.03300 1.22537 0.99179 0.96024 0.90763 1.22573 0.84083 0.92767 0.93907 1.86392 1.30491 1.65693 1.54466 1.22996 1.02198 0.99268 0.93803 1.23626 0.99030 0.80931 0.99691 1.89093 1.95320 1.26052 1.20684 1.24155 0.98968 1.00731 0.81573 0.92001 0.95494 0.94648 0.93041 0.84963 0.92158 0.94475 0.75896 0.88283 0.89534 0.90670 0.86934 0.88163 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.27 8.94 71.98 0.64 -6.62 16 2 C 0.22 10.55 2.57 44.17 0.11 10.66 16 3 H 0.00 0.06 7.80 -2.39 -0.02 0.04 16 4 C -0.51 -27.74 8.84 25.60 0.23 -27.52 16 5 H 0.06 3.16 7.81 -2.91 -0.02 3.13 16 6 C 0.01 0.41 5.30 84.65 0.45 0.86 16 7 N -0.92 -52.60 11.32 21.45 0.24 -52.36 16 8 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.68 -26.55 5.59 -495.45 -2.77 -29.31 16 13 C 0.05 1.50 4.42 86.30 0.38 1.88 16 14 C 0.11 3.08 1.25 -9.78 -0.01 3.07 16 15 O -0.56 -17.79 13.01 -148.98 -1.94 -19.73 16 16 C -0.14 -3.38 6.54 31.61 0.21 -3.17 16 17 C 0.04 0.90 7.63 72.49 0.55 1.46 16 18 O -0.39 -10.77 11.65 -148.98 -1.74 -12.51 16 19 C 0.02 0.61 6.05 72.48 0.44 1.04 16 20 H 0.06 3.24 6.07 -2.38 -0.01 3.22 16 21 H 0.03 1.08 7.45 -2.39 -0.02 1.06 16 22 H 0.03 1.54 8.13 -2.38 -0.02 1.52 16 23 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 24 H 0.33 11.88 7.63 -89.69 -0.68 11.20 16 25 H 0.06 2.20 8.06 -2.39 -0.02 2.18 16 26 H 0.04 1.18 7.38 -2.38 -0.02 1.17 16 27 H 0.39 11.58 8.46 -74.06 -0.63 10.96 16 28 H 0.10 2.03 7.73 -2.39 -0.02 2.01 16 29 H 0.09 2.06 8.00 -2.39 -0.02 2.04 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.10 2.57 8.09 -2.39 -0.02 2.55 16 33 H 0.07 1.77 7.83 -2.39 -0.02 1.75 16 Total: -1.00 -60.87 269.00 -1.38 -62.24 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.20 Total: 24.61 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: 3.00 Total: -18.34 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -2.52 Total: -81.67 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -3.67 Total: -32.24 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -60.87 -1.38 -62.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229620814.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.164 kcal (2) G-P(sol) polarization free energy of solvation -60.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds