Wall clock time and date at job start Mon Mar 30 2020 02:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81404 * 102.99861 * 2 1 4 4 C 1.53006 * 109.47098 * 64.99740 * 3 2 1 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 3 7 7 N 1.46500 * 109.47023 * 299.99760 * 6 5 4 8 8 C 1.36937 * 120.00054 * 205.00333 * 7 6 5 9 9 H 1.08005 * 120.00065 * 359.97438 * 8 7 6 10 10 C 1.38815 * 120.00277 * 179.97438 * 8 7 6 11 11 N 1.31617 * 119.99505 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00222 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47305 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47071 * 120.00263 * 12 10 8 15 15 H 1.48497 * 109.47385 * 239.99899 * 12 10 8 16 16 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 17 17 C 1.52997 * 109.47118 * 184.99775 * 3 2 1 18 18 H 1.08996 * 109.47351 * 60.00183 * 1 2 3 19 19 H 1.08997 * 109.46978 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47428 * 299.99774 * 1 2 3 21 21 H 1.09001 * 109.46975 * 304.99992 * 3 2 1 22 22 H 1.08998 * 109.46505 * 59.99714 * 4 3 2 23 23 H 1.08996 * 109.46884 * 300.00595 * 4 3 2 24 24 H 1.09002 * 109.47153 * 180.02562 * 5 4 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 27 27 H 0.96999 * 120.00261 * 25.00074 * 7 6 5 28 28 H 0.97006 * 119.99759 * 179.97438 * 11 10 8 29 29 H 1.08992 * 109.47554 * 59.99639 * 16 6 5 30 30 H 1.09004 * 109.47108 * 179.97438 * 16 6 5 31 31 H 1.09002 * 109.47045 * 60.00047 * 17 3 2 32 32 H 1.09001 * 109.47375 * 299.99972 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 1.7427 2.4016 1.3074 5 6 2.0874 3.8923 1.3077 6 6 3.6024 4.0654 1.1822 7 7 4.2640 3.4110 2.3137 8 6 5.5034 3.8302 2.7179 9 1 5.9933 4.6429 2.2022 10 6 6.1301 3.2105 3.7903 11 7 5.5328 2.2204 4.4189 12 14 7.8211 3.7818 4.3412 13 1 8.2708 4.9025 3.4770 14 1 7.7531 4.2414 5.7517 15 1 8.7834 2.6560 4.2334 16 6 4.0816 3.4314 -0.1251 17 6 3.7369 1.9413 -0.1257 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 1.7294 2.2541 -0.8418 22 1 2.2353 1.9150 2.1491 23 1 0.6635 2.2778 1.3969 24 1 1.7463 4.3439 2.2392 25 1 1.5951 4.3792 0.4658 26 1 3.8479 5.1274 1.1829 27 1 3.8242 2.6808 2.7766 28 1 5.9709 1.7870 5.1682 29 1 3.5894 3.9182 -0.9669 30 1 5.1609 3.5552 -0.2147 31 1 4.0784 1.4895 -1.0570 32 1 4.2295 1.4547 0.7162 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235021226.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:28 Heat of formation + Delta-G solvation = -9.956871 kcal Electronic energy + Delta-G solvation = -13005.434418 eV Core-core repulsion = 10898.579366 eV Total energy + Delta-G solvation = -2106.855052 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.26769 -33.58126 -31.06114 -30.41016 -28.77597 -28.03097 -23.62143 -22.09274 -21.80200 -18.51074 -17.19010 -16.19879 -14.96522 -14.64049 -14.01577 -13.87529 -13.62506 -13.33458 -13.21242 -12.67595 -12.40454 -11.92276 -11.68525 -11.31712 -10.91274 -10.79363 -10.64888 -10.42962 -10.13125 -10.04205 -9.60702 -9.49392 -9.34291 -8.82005 -7.44729 -6.89746 -5.71979 -2.99991 1.93052 2.83124 3.45781 3.51447 3.53636 4.63350 5.05665 5.07716 5.18482 5.22726 5.47176 5.59780 5.64230 5.69976 5.80426 5.83333 5.95766 6.02785 6.06876 6.28570 6.36223 6.46320 6.72058 6.77966 6.85798 7.01564 7.09396 7.74985 8.46992 9.58194 10.17179 10.51952 11.50672 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.042869 B = 0.008064 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.000039 B = 3471.340945 C = 3674.244818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.275 6.275 3 C -0.037 4.037 4 C -0.111 4.111 5 C -0.119 4.119 6 C 0.172 3.828 7 N -0.721 5.721 8 C -0.237 4.237 9 H 0.070 0.930 10 C -0.014 4.014 11 N -0.931 5.931 12 Si 0.904 3.096 13 H -0.281 1.281 14 H -0.293 1.293 15 H -0.292 1.292 16 C -0.128 4.128 17 C -0.091 4.091 18 H 0.070 0.930 19 H 0.095 0.905 20 H 0.075 0.925 21 H 0.077 0.923 22 H 0.084 0.916 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.385 0.615 28 H 0.254 0.746 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 -0.427 -9.255 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.046 6.046 3 C -0.165 4.165 4 C -0.150 4.150 5 C -0.159 4.159 6 C 0.062 3.938 7 N -0.363 5.363 8 C -0.368 4.368 9 H 0.088 0.912 10 C -0.210 4.210 11 N -0.580 5.580 12 Si 0.735 3.265 13 H -0.207 1.207 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.170 4.170 17 C -0.130 4.130 18 H 0.089 0.911 19 H 0.113 0.887 20 H 0.094 0.906 21 H 0.095 0.905 22 H 0.103 0.897 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.671 -1.269 -9.234 12.730 hybrid contribution -0.053 0.964 0.465 1.071 sum -8.724 -0.306 -8.769 12.373 Atomic orbital electron populations 1.23328 0.95351 1.05808 1.04536 1.86936 1.06157 1.13605 1.97898 1.23211 1.01291 0.91336 1.00673 1.21794 0.99490 0.96729 0.97001 1.21808 0.97786 0.95120 1.01207 1.20224 0.89881 0.95694 0.87983 1.42501 1.18831 1.40901 1.34081 1.19293 0.93672 1.13273 1.10567 0.91240 1.24719 0.98669 0.98726 0.98889 1.69671 1.38252 1.25839 1.24248 0.86162 0.84436 0.77679 0.78191 1.20653 1.21998 1.21964 1.22145 1.01398 0.94476 0.98966 1.21226 0.91072 0.98132 1.02592 0.91082 0.88672 0.90556 0.90512 0.89740 0.93097 0.91629 0.92677 0.93402 0.78021 0.93632 0.93798 0.91595 0.92736 0.89541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 10.45 101.05 1.06 -0.32 16 2 S -0.27 -4.25 21.79 -107.50 -2.34 -6.59 16 3 C -0.04 -0.57 2.65 -26.73 -0.07 -0.64 16 4 C -0.11 -1.79 4.94 -26.73 -0.13 -1.92 16 5 C -0.12 -1.95 5.61 -26.73 -0.15 -2.10 16 6 C 0.17 3.36 3.10 -67.93 -0.21 3.15 16 7 N -0.72 -17.69 4.28 -53.42 -0.23 -17.91 16 8 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 9 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 10 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 11 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 12 Si 0.90 22.49 29.55 -169.99 -5.02 17.47 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 16 C -0.13 -2.26 5.61 -26.76 -0.15 -2.41 16 17 C -0.09 -1.61 5.05 -26.76 -0.14 -1.75 16 18 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 19 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 20 H 0.08 0.84 7.14 -51.93 -0.37 0.47 16 21 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 22 H 0.08 1.63 6.50 -51.93 -0.34 1.29 16 23 H 0.05 0.72 6.92 -51.93 -0.36 0.36 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 27 H 0.38 10.07 6.06 -40.82 -0.25 9.82 16 28 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.85 7.60 -51.93 -0.39 1.45 16 LS Contribution 266.42 15.07 4.01 4.01 Total: -1.00 -29.38 266.42 -7.95 -37.33 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.06 Total: 6.29 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.04 Total: -13.14 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.50 Total: -45.36 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: -4.25 SS G_CDS: -2.34 Total: -6.59 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.38 -7.95 -37.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235021226.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.373 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds