Wall clock time and date at job start Mon Mar 30 2020 02:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81404 * 102.99861 * 2 1 4 4 C 1.53006 * 109.47098 * 64.99740 * 3 2 1 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 3 7 7 N 1.46500 * 109.47023 * 299.99760 * 6 5 4 8 8 C 1.36937 * 120.00054 * 205.00333 * 7 6 5 9 9 H 1.08005 * 120.00065 * 359.97438 * 8 7 6 10 10 C 1.38815 * 120.00277 * 179.97438 * 8 7 6 11 11 N 1.31617 * 119.99505 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00222 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47305 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47071 * 120.00263 * 12 10 8 15 15 H 1.48497 * 109.47385 * 239.99899 * 12 10 8 16 16 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 17 17 C 1.52997 * 109.47118 * 184.99775 * 3 2 1 18 18 H 1.08996 * 109.47351 * 60.00183 * 1 2 3 19 19 H 1.08997 * 109.46978 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47428 * 299.99774 * 1 2 3 21 21 H 1.09001 * 109.46975 * 304.99992 * 3 2 1 22 22 H 1.08998 * 109.46505 * 59.99714 * 4 3 2 23 23 H 1.08996 * 109.46884 * 300.00595 * 4 3 2 24 24 H 1.09002 * 109.47153 * 180.02562 * 5 4 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 5 4 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 27 27 H 0.96999 * 120.00261 * 25.00074 * 7 6 5 28 28 H 0.97006 * 119.99759 * 179.97438 * 11 10 8 29 29 H 1.08992 * 109.47554 * 59.99639 * 16 6 5 30 30 H 1.09004 * 109.47108 * 179.97438 * 16 6 5 31 31 H 1.09002 * 109.47045 * 60.00047 * 17 3 2 32 32 H 1.09001 * 109.47375 * 299.99972 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 1.7427 2.4016 1.3074 5 6 2.0874 3.8923 1.3077 6 6 3.6024 4.0654 1.1822 7 7 4.2640 3.4110 2.3137 8 6 5.5034 3.8302 2.7179 9 1 5.9933 4.6429 2.2022 10 6 6.1301 3.2105 3.7903 11 7 5.5328 2.2204 4.4189 12 14 7.8211 3.7818 4.3412 13 1 8.2708 4.9025 3.4770 14 1 7.7531 4.2414 5.7517 15 1 8.7834 2.6560 4.2334 16 6 4.0816 3.4314 -0.1251 17 6 3.7369 1.9413 -0.1257 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5138 0.8899 21 1 1.7294 2.2541 -0.8418 22 1 2.2353 1.9150 2.1491 23 1 0.6635 2.2778 1.3969 24 1 1.7463 4.3439 2.2392 25 1 1.5951 4.3792 0.4658 26 1 3.8479 5.1274 1.1829 27 1 3.8242 2.6808 2.7766 28 1 5.9709 1.7870 5.1682 29 1 3.5894 3.9182 -0.9669 30 1 5.1609 3.5552 -0.2147 31 1 4.0784 1.4895 -1.0570 32 1 4.2295 1.4547 0.7162 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235021226.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:28 Heat of formation + Delta-G solvation = -27.203997 kcal Electronic energy + Delta-G solvation = -13006.182310 eV Core-core repulsion = 10898.579366 eV Total energy + Delta-G solvation = -2107.602944 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.73838 -35.47551 -32.88914 -31.76532 -30.03874 -29.43388 -25.66088 -23.46289 -23.23703 -20.03460 -19.20713 -17.46292 -16.64882 -16.27224 -15.58444 -15.38190 -15.04700 -14.64243 -14.36190 -14.04000 -13.76325 -13.50655 -13.06776 -12.87325 -12.73840 -12.53287 -12.21126 -12.04178 -11.88605 -11.66019 -11.28680 -10.99998 -10.87838 -10.52415 -8.92844 -8.64402 -7.89775 -5.16158 0.81789 1.47240 1.47745 1.57394 1.75496 2.58855 3.43199 3.76472 3.78355 4.06917 4.14483 4.32977 4.37841 4.40293 4.44300 4.56248 4.64167 4.67657 4.82201 4.91835 5.01019 5.09018 5.31486 5.32224 5.34707 5.50379 5.60123 5.64279 6.33311 7.39255 8.19609 8.41125 9.34032 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.042869 B = 0.008064 C = 0.007619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.000039 B = 3471.340945 C = 3674.244818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 S -0.335 6.335 3 C -0.023 4.023 4 C -0.105 4.105 5 C -0.111 4.111 6 C 0.161 3.839 7 N -0.732 5.732 8 C -0.231 4.231 9 H 0.074 0.926 10 C -0.079 4.079 11 N -0.970 5.970 12 Si 0.967 3.033 13 H -0.266 1.266 14 H -0.295 1.295 15 H -0.298 1.298 16 C -0.120 4.120 17 C -0.086 4.086 18 H 0.091 0.909 19 H 0.109 0.891 20 H 0.081 0.919 21 H 0.106 0.894 22 H 0.043 0.957 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.094 0.906 26 H 0.046 0.954 27 H 0.373 0.627 28 H 0.248 0.752 29 H 0.083 0.917 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.939 0.610 -10.975 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 S -0.107 6.107 3 C -0.151 4.151 4 C -0.144 4.144 5 C -0.150 4.150 6 C 0.053 3.947 7 N -0.373 5.373 8 C -0.363 4.363 9 H 0.092 0.908 10 C -0.271 4.271 11 N -0.622 5.622 12 Si 0.797 3.203 13 H -0.190 1.190 14 H -0.223 1.223 15 H -0.226 1.226 16 C -0.161 4.161 17 C -0.125 4.125 18 H 0.110 0.890 19 H 0.128 0.872 20 H 0.100 0.900 21 H 0.124 0.876 22 H 0.062 0.938 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.112 0.888 26 H 0.064 0.936 27 H 0.206 0.794 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.138 -0.194 -11.001 14.961 hybrid contribution 0.319 0.643 0.925 1.171 sum -9.819 0.449 -10.075 14.075 Atomic orbital electron populations 1.23393 0.90862 1.07254 1.05800 1.87192 1.11152 1.14296 1.98032 1.23069 0.99582 0.91255 1.01189 1.21711 1.00648 0.96187 0.95881 1.21737 0.95282 0.95510 1.02514 1.20538 0.91975 0.95096 0.87073 1.42706 1.18257 1.40861 1.35492 1.19677 0.94606 1.12367 1.09692 0.90761 1.25483 1.02322 0.99514 0.99797 1.69834 1.39776 1.27569 1.24994 0.85153 0.80275 0.77297 0.77570 1.19031 1.22284 1.22564 1.22019 1.00392 0.94628 0.99111 1.21100 0.92729 0.97671 1.00989 0.88968 0.87220 0.90004 0.87610 0.93798 0.90435 0.92385 0.88772 0.93620 0.79353 0.94355 0.89888 0.93787 0.91763 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 10.45 113.37 1.19 -0.85 16 2 S -0.34 -9.95 21.79 -56.49 -1.23 -11.18 16 3 C -0.02 -0.66 2.65 30.60 0.08 -0.58 16 4 C -0.10 -3.20 4.94 30.60 0.15 -3.05 16 5 C -0.11 -3.34 5.61 30.59 0.17 -3.17 16 6 C 0.16 6.11 3.10 44.99 0.14 6.25 16 7 N -0.73 -36.54 4.28 -322.93 -1.38 -37.92 16 8 C -0.23 -12.87 9.93 84.03 0.83 -12.03 16 9 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 10 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 11 N -0.97 -60.64 13.06 21.65 0.28 -60.36 16 12 Si 0.97 47.08 29.55 68.60 2.03 49.10 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 15 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 16 C -0.12 -4.04 5.61 30.58 0.17 -3.87 16 17 C -0.09 -2.98 5.05 30.58 0.15 -2.83 16 18 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 19 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 20 H 0.08 1.52 7.14 -2.39 -0.02 1.50 16 21 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 22 H 0.04 1.71 6.50 -2.39 -0.02 1.70 16 23 H 0.08 1.95 6.92 -2.39 -0.02 1.93 16 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 27 H 0.37 20.28 6.06 -92.71 -0.56 19.72 16 28 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.04 1.72 7.60 -2.39 -0.02 1.70 16 Total: -1.00 -65.16 266.42 3.58 -61.58 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.52 Total: 23.05 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 3.36 Total: -24.28 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -1.10 Total: -98.27 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.10 kcal Atomic # 16 Polarization: -9.95 SS G_CDS: -1.23 Total: -11.18 kcal Total: -65.16 3.58 -61.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235021226.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.379 kcal (2) G-P(sol) polarization free energy of solvation -65.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds