Wall clock time and date at job start Mon Mar 30 2020 02:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 103.00049 * 2 1 4 4 C 1.52994 * 110.02005 * 303.06171 * 3 2 1 5 5 N 1.46498 * 109.47341 * 303.25395 * 4 3 2 6 6 C 1.36933 * 120.00248 * 174.84046 * 5 4 3 7 7 H 1.08001 * 119.99810 * 4.73392 * 6 5 4 8 8 C 1.38811 * 120.00110 * 184.73068 * 6 5 4 9 9 N 1.31621 * 120.00176 * 173.55631 * 8 6 5 10 10 Si 1.86803 * 119.99984 * 353.82587 * 8 6 5 11 11 H 1.48501 * 109.46762 * 93.80859 * 10 8 6 12 12 H 1.48499 * 109.46980 * 213.80810 * 10 8 6 13 13 H 1.48494 * 109.47124 * 333.80818 * 10 8 6 14 14 C 1.54275 * 110.02987 * 64.45638 * 3 2 1 15 15 C 1.54958 * 104.15899 * 95.75472 * 14 3 2 16 16 C 1.54886 * 102.78132 * 37.88795 * 15 14 3 17 17 C 1.53878 * 110.03340 * 181.66743 * 3 2 1 18 18 H 1.09000 * 109.46641 * 305.26760 * 1 2 3 19 19 H 1.08998 * 109.46787 * 65.26612 * 1 2 3 20 20 H 1.08999 * 109.46744 * 185.26855 * 1 2 3 21 21 H 1.08995 * 109.47762 * 183.24965 * 4 3 2 22 22 H 1.09007 * 109.46935 * 63.25093 * 4 3 2 23 23 H 0.97006 * 119.99547 * 354.83972 * 5 4 3 24 24 H 0.96997 * 120.00472 * 180.02562 * 9 8 6 25 25 H 1.08996 * 110.48232 * 214.40162 * 14 3 2 26 26 H 1.08996 * 110.48290 * 337.04159 * 14 3 2 27 27 H 1.09004 * 110.72274 * 279.57060 * 15 14 3 28 28 H 1.09007 * 110.76514 * 156.22102 * 15 14 3 29 29 H 1.09003 * 110.48738 * 203.40413 * 16 15 14 30 30 H 1.08995 * 110.48984 * 80.76223 * 16 15 14 31 31 H 1.09004 * 110.03110 * 359.95655 * 17 3 2 32 32 H 1.09002 * 110.02889 * 121.38292 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.5758 2.4543 -1.2047 5 7 2.0148 1.7942 -2.4367 6 6 1.4828 2.1693 -3.6415 7 1 0.7973 3.0022 -3.6932 8 6 1.8247 1.4790 -4.7962 9 7 1.2193 1.7555 -5.9318 10 14 3.1386 0.1525 -4.7371 11 1 2.4970 -1.1707 -4.5303 12 1 3.8907 0.1434 -6.0175 13 1 4.0724 0.4304 -3.6164 14 6 1.7320 2.4230 1.3078 15 6 2.9793 2.4135 2.2271 16 6 4.1339 2.7203 1.2414 17 6 3.7487 1.9560 -0.0421 18 1 -0.3632 0.5934 0.8391 19 1 -0.3633 0.4300 -0.9334 20 1 -0.3633 -1.0233 0.0944 21 1 1.8734 3.5025 -1.2283 22 1 0.4909 2.3863 -1.1229 23 1 2.6823 1.0914 -2.3990 24 1 1.4579 1.2729 -6.7387 25 1 1.4029 3.4453 1.1220 26 1 0.9267 1.8364 1.7499 27 1 3.1130 1.4337 2.6857 28 1 2.9044 3.1904 2.9881 29 1 5.0806 2.3509 1.6357 30 1 4.1933 3.7907 1.0446 31 1 4.2444 0.9854 -0.0617 32 1 4.0290 2.5368 -0.9209 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235095619.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:26 Heat of formation + Delta-G solvation = -0.779757 kcal Electronic energy + Delta-G solvation = -13082.798692 eV Core-core repulsion = 10976.341589 eV Total energy + Delta-G solvation = -2106.457103 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.36256 -34.48026 -31.56003 -29.54126 -28.72097 -27.92906 -24.64452 -21.92110 -20.60457 -19.65619 -17.65621 -16.31107 -15.22598 -14.59553 -14.49150 -13.87824 -13.69361 -13.36650 -12.97095 -12.55430 -12.38329 -12.30984 -11.79817 -11.12494 -11.00720 -10.92724 -10.87196 -10.62251 -10.44900 -10.36252 -10.08674 -9.57435 -9.39406 -8.82716 -7.29404 -7.07972 -5.73612 -3.07372 2.12030 2.93798 3.45130 3.50798 3.52113 4.57399 4.65888 4.69003 4.98847 5.38167 5.42121 5.48173 5.54011 5.57335 5.60864 5.66160 5.74262 5.86896 5.91318 6.00848 6.09287 6.12300 6.24596 6.39231 6.43577 6.53548 6.57764 8.03595 8.45764 9.26964 9.99542 10.21575 11.44582 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.035323 B = 0.010325 C = 0.009752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.496530 B = 2711.269840 C = 2870.446915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.256 6.256 3 C -0.034 4.034 4 C 0.167 3.833 5 N -0.748 5.748 6 C -0.244 4.244 7 H 0.087 0.913 8 C 0.007 3.993 9 N -0.934 5.934 10 Si 0.881 3.119 11 H -0.282 1.282 12 H -0.293 1.293 13 H -0.275 1.275 14 C -0.111 4.111 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.101 4.101 18 H 0.070 0.930 19 H 0.086 0.914 20 H 0.092 0.908 21 H 0.033 0.967 22 H 0.029 0.971 23 H 0.368 0.632 24 H 0.259 0.741 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.476 -0.187 16.488 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.028 6.028 3 C -0.144 4.144 4 C 0.038 3.962 5 N -0.394 5.394 6 C -0.373 4.373 7 H 0.105 0.895 8 C -0.189 4.189 9 N -0.582 5.582 10 Si 0.712 3.288 11 H -0.209 1.209 12 H -0.219 1.219 13 H -0.201 1.201 14 C -0.151 4.151 15 C -0.157 4.157 16 C -0.158 4.158 17 C -0.140 4.140 18 H 0.089 0.911 19 H 0.105 0.895 20 H 0.110 0.890 21 H 0.050 0.950 22 H 0.046 0.954 23 H 0.203 0.797 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.992 -0.989 16.299 16.601 hybrid contribution -0.011 0.013 -0.254 0.254 sum 2.981 -0.977 16.045 16.349 Atomic orbital electron populations 1.23372 0.94650 1.05418 1.05349 1.86440 1.07554 1.11321 1.97457 1.23711 0.99217 0.92981 0.98504 1.20827 0.96205 0.94759 0.84455 1.42739 1.49869 1.44662 1.02159 1.19003 1.22031 1.12771 0.83542 0.89518 1.24618 0.99783 0.98883 0.95567 1.69727 1.44045 1.44918 0.99483 0.86545 0.82781 0.82932 0.76592 1.20887 1.21924 1.20124 1.22684 0.98050 1.00707 0.93649 1.22459 0.94542 1.01517 0.97199 1.22354 0.98149 1.00223 0.95117 1.22068 0.91971 1.00913 0.99001 0.91125 0.89481 0.88973 0.94971 0.95352 0.79737 0.93144 0.90781 0.91345 0.91160 0.91715 0.91701 0.91482 0.91345 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 9.90 101.05 1.00 -0.77 16 2 S -0.26 -4.37 20.06 -107.50 -2.16 -6.52 16 3 C -0.03 -0.55 0.55 -89.50 -0.05 -0.60 16 4 C 0.17 3.29 4.55 -4.05 -0.02 3.28 16 5 N -0.75 -18.15 4.75 -59.91 -0.28 -18.44 16 6 C -0.24 -7.00 10.46 -15.06 -0.16 -7.16 16 7 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 8 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 9 N -0.93 -29.77 13.97 55.49 0.78 -29.00 16 10 Si 0.88 22.98 27.75 -169.99 -4.72 18.26 16 11 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 13 H -0.28 -6.84 6.52 56.52 0.37 -6.47 16 14 C -0.11 -1.43 5.84 -25.03 -0.15 -1.58 16 15 C -0.12 -1.34 6.91 -24.70 -0.17 -1.51 16 16 C -0.12 -1.45 6.83 -25.08 -0.17 -1.62 16 17 C -0.10 -1.56 5.66 -25.61 -0.15 -1.71 16 18 H 0.07 0.89 6.84 -51.92 -0.35 0.54 16 19 H 0.09 1.49 7.36 -51.92 -0.38 1.10 16 20 H 0.09 1.22 8.14 -51.92 -0.42 0.79 16 21 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.03 0.57 6.96 -51.92 -0.36 0.21 16 23 H 0.37 8.99 4.73 -40.82 -0.19 8.80 16 24 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 25 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 26 H 0.07 0.84 6.37 -51.93 -0.33 0.51 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.10 7.60 -51.93 -0.39 0.70 16 32 H 0.08 1.45 7.53 -51.93 -0.39 1.06 16 LS Contribution 263.92 15.07 3.98 3.98 Total: -1.00 -31.29 263.92 -7.30 -38.59 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.94 Total: 4.68 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 0.05 Total: -11.55 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.49 Total: -47.43 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.72 Total: 18.26 kcal Atomic # 16 Polarization: -4.37 SS G_CDS: -2.16 Total: -6.52 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.29 -7.30 -38.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235095619.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.811 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds