Wall clock time and date at job start Mon Mar 30 2020 02:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 103.00049 * 2 1 4 4 C 1.52994 * 110.02005 * 303.06171 * 3 2 1 5 5 N 1.46498 * 109.47341 * 303.25395 * 4 3 2 6 6 C 1.36933 * 120.00248 * 174.84046 * 5 4 3 7 7 H 1.08001 * 119.99810 * 4.73392 * 6 5 4 8 8 C 1.38811 * 120.00110 * 184.73068 * 6 5 4 9 9 N 1.31621 * 120.00176 * 173.55631 * 8 6 5 10 10 Si 1.86803 * 119.99984 * 353.82587 * 8 6 5 11 11 H 1.48501 * 109.46762 * 93.80859 * 10 8 6 12 12 H 1.48499 * 109.46980 * 213.80810 * 10 8 6 13 13 H 1.48494 * 109.47124 * 333.80818 * 10 8 6 14 14 C 1.54275 * 110.02987 * 64.45638 * 3 2 1 15 15 C 1.54958 * 104.15899 * 95.75472 * 14 3 2 16 16 C 1.54886 * 102.78132 * 37.88795 * 15 14 3 17 17 C 1.53878 * 110.03340 * 181.66743 * 3 2 1 18 18 H 1.09000 * 109.46641 * 305.26760 * 1 2 3 19 19 H 1.08998 * 109.46787 * 65.26612 * 1 2 3 20 20 H 1.08999 * 109.46744 * 185.26855 * 1 2 3 21 21 H 1.08995 * 109.47762 * 183.24965 * 4 3 2 22 22 H 1.09007 * 109.46935 * 63.25093 * 4 3 2 23 23 H 0.97006 * 119.99547 * 354.83972 * 5 4 3 24 24 H 0.96997 * 120.00472 * 180.02562 * 9 8 6 25 25 H 1.08996 * 110.48232 * 214.40162 * 14 3 2 26 26 H 1.08996 * 110.48290 * 337.04159 * 14 3 2 27 27 H 1.09004 * 110.72274 * 279.57060 * 15 14 3 28 28 H 1.09007 * 110.76514 * 156.22102 * 15 14 3 29 29 H 1.09003 * 110.48738 * 203.40413 * 16 15 14 30 30 H 1.08995 * 110.48984 * 80.76223 * 16 15 14 31 31 H 1.09004 * 110.03110 * 359.95655 * 17 3 2 32 32 H 1.09002 * 110.02889 * 121.38292 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.5758 2.4543 -1.2047 5 7 2.0148 1.7942 -2.4367 6 6 1.4828 2.1693 -3.6415 7 1 0.7973 3.0022 -3.6932 8 6 1.8247 1.4790 -4.7962 9 7 1.2193 1.7555 -5.9318 10 14 3.1386 0.1525 -4.7371 11 1 2.4970 -1.1707 -4.5303 12 1 3.8907 0.1434 -6.0175 13 1 4.0724 0.4304 -3.6164 14 6 1.7320 2.4230 1.3078 15 6 2.9793 2.4135 2.2271 16 6 4.1339 2.7203 1.2414 17 6 3.7487 1.9560 -0.0421 18 1 -0.3632 0.5934 0.8391 19 1 -0.3633 0.4300 -0.9334 20 1 -0.3633 -1.0233 0.0944 21 1 1.8734 3.5025 -1.2283 22 1 0.4909 2.3863 -1.1229 23 1 2.6823 1.0914 -2.3990 24 1 1.4579 1.2729 -6.7387 25 1 1.4029 3.4453 1.1220 26 1 0.9267 1.8364 1.7499 27 1 3.1130 1.4337 2.6857 28 1 2.9044 3.1904 2.9881 29 1 5.0806 2.3509 1.6357 30 1 4.1933 3.7907 1.0446 31 1 4.2444 0.9854 -0.0617 32 1 4.0290 2.5368 -0.9209 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235095619.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:26 Heat of formation + Delta-G solvation = -20.145794 kcal Electronic energy + Delta-G solvation = -13083.638466 eV Core-core repulsion = 10976.341589 eV Total energy + Delta-G solvation = -2107.296877 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.58036 -36.33518 -33.60585 -30.93970 -30.04370 -29.06089 -26.35978 -23.80072 -21.64888 -20.95415 -19.73830 -17.58099 -16.63841 -16.38517 -16.02250 -15.41183 -15.06779 -14.72192 -14.46848 -14.08646 -13.84682 -13.74905 -13.48287 -12.94594 -12.34152 -12.16783 -12.02154 -11.96500 -11.92587 -11.80365 -11.77485 -11.37995 -11.01747 -10.67255 -9.31264 -8.53707 -8.05324 -5.36148 0.84769 1.36017 1.38664 1.45482 1.67835 2.46504 3.25607 3.39095 3.55952 3.80249 4.00848 4.27741 4.34213 4.36265 4.43379 4.51261 4.56004 4.76955 4.81576 4.89027 4.92700 5.00432 5.07659 5.15845 5.23479 5.31693 5.49265 5.72837 6.18971 7.06572 7.83371 8.04398 9.16081 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.035323 B = 0.010325 C = 0.009752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.496530 B = 2711.269840 C = 2870.446915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.291 6.291 3 C -0.026 4.026 4 C 0.164 3.836 5 N -0.749 5.749 6 C -0.230 4.230 7 H 0.057 0.943 8 C -0.056 4.056 9 N -0.980 5.980 10 Si 0.945 3.055 11 H -0.281 1.281 12 H -0.293 1.293 13 H -0.258 1.258 14 C -0.107 4.107 15 C -0.111 4.111 16 C -0.114 4.114 17 C -0.105 4.105 18 H 0.095 0.905 19 H 0.059 0.941 20 H 0.108 0.892 21 H 0.034 0.966 22 H 0.025 0.975 23 H 0.369 0.631 24 H 0.258 0.742 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.331 -0.502 18.978 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.063 6.063 3 C -0.136 4.136 4 C 0.035 3.965 5 N -0.395 5.395 6 C -0.361 4.361 7 H 0.075 0.925 8 C -0.248 4.248 9 N -0.631 5.631 10 Si 0.773 3.227 11 H -0.207 1.207 12 H -0.219 1.219 13 H -0.182 1.182 14 C -0.147 4.147 15 C -0.148 4.148 16 C -0.152 4.152 17 C -0.144 4.144 18 H 0.114 0.886 19 H 0.078 0.922 20 H 0.127 0.873 21 H 0.052 0.948 22 H 0.043 0.957 23 H 0.203 0.797 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.854 -1.294 18.844 19.277 hybrid contribution -0.358 0.179 -1.009 1.085 sum 3.496 -1.116 17.835 18.209 Atomic orbital electron populations 1.23383 0.92699 1.06833 1.04907 1.86552 1.09793 1.12552 1.97448 1.23703 0.99558 0.92002 0.98335 1.20988 0.96256 0.94889 0.84338 1.42734 1.49692 1.44835 1.02249 1.18992 1.20548 1.11217 0.85351 0.92488 1.25354 1.02369 1.01780 0.95283 1.69880 1.46123 1.46809 1.00276 0.85517 0.80274 0.79900 0.76986 1.20708 1.21933 1.18237 1.22701 0.99239 1.00763 0.92011 1.22443 0.92753 1.02585 0.97044 1.22350 0.99279 1.00177 0.93407 1.22097 0.91383 1.00741 1.00132 0.88609 0.92196 0.87297 0.94801 0.95686 0.79657 0.93334 0.90068 0.90465 0.90962 0.89157 0.90141 0.90724 0.92050 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.08 9.90 113.37 1.12 -1.95 16 2 S -0.29 -9.46 20.06 -56.49 -1.13 -10.60 16 3 C -0.03 -0.79 0.55 -10.07 -0.01 -0.80 16 4 C 0.16 6.35 4.55 86.38 0.39 6.74 16 5 N -0.75 -36.21 4.75 -343.47 -1.63 -37.84 16 6 C -0.23 -13.44 10.46 84.03 0.88 -12.56 16 7 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 8 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 9 N -0.98 -63.91 13.97 21.65 0.30 -63.61 16 10 Si 0.95 47.75 27.75 68.60 1.90 49.65 16 11 H -0.28 -14.03 7.11 99.48 0.71 -13.33 16 12 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 13 H -0.26 -12.09 6.52 99.48 0.65 -11.44 16 14 C -0.11 -2.44 5.84 31.70 0.19 -2.25 16 15 C -0.11 -2.05 6.91 31.91 0.22 -1.83 16 16 C -0.11 -2.38 6.83 31.67 0.22 -2.17 16 17 C -0.10 -3.06 5.66 31.32 0.18 -2.88 16 18 H 0.10 2.16 6.84 -2.39 -0.02 2.15 16 19 H 0.06 2.00 7.36 -2.39 -0.02 1.99 16 20 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 21 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.03 1.00 6.96 -2.38 -0.02 0.98 16 23 H 0.37 17.71 4.73 -92.70 -0.44 17.27 16 24 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 25 H 0.08 1.75 7.85 -2.39 -0.02 1.73 16 26 H 0.08 1.63 6.37 -2.39 -0.02 1.62 16 27 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.87 7.60 -2.39 -0.02 1.85 16 32 H 0.06 2.07 7.53 -2.39 -0.02 2.05 16 Total: -1.00 -67.61 263.92 3.69 -63.92 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.59 Total: 19.10 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 3.66 Total: -20.62 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -1.33 Total: -101.45 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.90 Total: 49.65 kcal Atomic # 16 Polarization: -9.46 SS G_CDS: -1.13 Total: -10.60 kcal Total: -67.61 3.69 -63.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235095619.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.771 kcal (2) G-P(sol) polarization free energy of solvation -67.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds