Wall clock time and date at job start Mon Mar 30 2020 02:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00088 * 2 1 4 4 H 1.08994 * 110.43346 * 305.70255 * 3 2 1 5 5 C 1.54887 * 110.48413 * 68.24160 * 3 2 1 6 6 C 1.55035 * 102.68333 * 156.51398 * 5 3 2 7 7 C 1.54261 * 104.28027 * 322.23850 * 6 5 3 8 8 C 1.53875 * 106.60321 * 23.50967 * 7 6 5 9 9 H 1.08990 * 110.03736 * 240.71699 * 8 7 6 10 10 N 1.46903 * 110.07023 * 119.30544 * 8 7 6 11 11 C 1.46905 * 110.99484 * 87.81591 * 10 8 7 12 12 C 1.50701 * 109.46895 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00206 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99871 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00076 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00146 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47206 * 89.99923 * 16 14 12 18 18 H 1.48499 * 109.46962 * 210.00081 * 16 14 12 19 19 H 1.48497 * 109.46806 * 329.99539 * 16 14 12 20 20 H 1.09002 * 109.46881 * 299.99990 * 1 2 3 21 21 H 1.09000 * 109.46946 * 60.00038 * 1 2 3 22 22 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 23 23 H 1.09000 * 110.76001 * 274.93377 * 5 3 2 24 24 H 1.09004 * 110.75469 * 38.30826 * 5 3 2 25 25 H 1.08993 * 110.52570 * 203.48585 * 6 5 3 26 26 H 1.09003 * 110.35993 * 80.90161 * 6 5 3 27 27 H 1.09004 * 110.02834 * 264.22637 * 7 6 5 28 28 H 1.08998 * 110.03429 * 142.79902 * 7 6 5 29 29 H 1.00892 * 111.00269 * 323.86053 * 10 8 7 30 30 H 1.08996 * 109.46865 * 299.99369 * 11 10 8 31 31 H 1.09000 * 109.47272 * 59.99776 * 11 10 8 32 32 H 0.96996 * 120.00352 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7269 2.2724 -0.8294 5 6 1.8199 2.4166 1.3476 6 6 2.7447 3.6590 1.4163 7 6 4.0817 3.1716 0.8208 8 6 3.7495 1.9689 -0.0796 9 1 4.2629 1.0783 0.2824 10 7 4.1482 2.2510 -1.4651 11 6 5.5479 1.8704 -1.6978 12 6 5.9198 2.1732 -3.1265 13 1 5.1894 2.6048 -3.7948 14 6 7.1926 1.8992 -3.5803 15 7 7.5171 2.1630 -4.8273 16 14 8.4557 1.1521 -2.4246 17 1 8.3788 -0.3291 -2.4980 18 1 9.8153 1.5976 -2.8225 19 1 8.1772 1.5940 -1.0345 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 0.7711 2.7133 1.3358 24 1 2.0218 1.7398 2.1778 25 1 2.8808 3.9774 2.4498 26 1 2.3337 4.4714 0.8168 27 1 4.7565 2.8647 1.6200 28 1 4.5388 3.9654 0.2300 29 1 3.9942 3.2211 -1.6953 30 1 6.1944 2.4351 -1.0262 31 1 5.6707 0.8039 -1.5090 32 1 8.4123 1.9700 -5.1467 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235144000.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:26 Heat of formation + Delta-G solvation = -12.618063 kcal Electronic energy + Delta-G solvation = -12610.746664 eV Core-core repulsion = 10503.776214 eV Total energy + Delta-G solvation = -2106.970450 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.34568 -34.15765 -32.09467 -29.25009 -28.45896 -28.03809 -25.32055 -21.36552 -20.66334 -19.96365 -16.88347 -16.53730 -15.32395 -14.90911 -14.38527 -13.86465 -13.63483 -13.52832 -13.21413 -13.08815 -12.53358 -12.09935 -11.69147 -11.61373 -11.23914 -11.01939 -10.82837 -10.61408 -10.46163 -10.32806 -9.80034 -9.62994 -9.26942 -8.57006 -7.46250 -7.40741 -6.03997 -4.01771 1.90282 2.80004 3.31191 3.37838 3.40174 4.43972 4.58110 4.63010 5.01229 5.16039 5.19715 5.24044 5.29885 5.49450 5.54002 5.61582 5.67663 5.72291 5.76803 5.86504 6.03487 6.23936 6.31564 6.37839 6.80229 7.04462 7.62310 7.90301 8.33582 8.66319 9.03887 9.58047 11.09329 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.036388 B = 0.007667 C = 0.007039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.300384 B = 3650.949494 C = 3976.825356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.250 6.250 3 C -0.044 4.044 4 H 0.096 0.904 5 C -0.119 4.119 6 C -0.118 4.118 7 C -0.150 4.150 8 C 0.104 3.896 9 H 0.080 0.920 10 N -0.670 5.670 11 C 0.166 3.834 12 C -0.515 4.515 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.901 5.901 16 Si 0.877 3.123 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.268 1.268 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.095 0.905 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.336 0.664 30 H -0.015 1.015 31 H 0.022 0.978 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.776 0.330 13.592 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.021 6.021 3 C -0.174 4.174 4 H 0.114 0.886 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.191 4.191 8 C -0.009 4.009 9 H 0.099 0.901 10 N -0.300 5.300 11 C 0.038 3.962 12 C -0.553 4.553 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.704 3.296 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.193 1.193 20 H 0.089 0.911 21 H 0.093 0.907 22 H 0.114 0.886 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.155 0.845 30 H 0.002 0.998 31 H 0.040 0.960 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.201 -1.206 13.159 17.322 hybrid contribution 0.391 1.280 0.894 1.609 sum -10.811 0.074 14.052 17.730 Atomic orbital electron populations 1.23338 0.95780 1.05862 1.04424 1.86975 1.05578 1.11830 1.97731 1.24093 1.00529 0.92761 0.99981 0.88580 1.22913 0.99091 0.97369 0.96568 1.22318 0.95479 0.97266 1.00646 1.22943 0.97366 0.98757 1.00028 1.21903 0.91596 0.97323 0.90078 0.90145 1.60469 1.25063 1.26274 1.18172 1.20010 0.83581 0.95427 0.97155 1.21052 0.97774 1.41928 0.94557 0.90319 1.24896 0.98137 0.95284 0.94979 1.69901 1.20359 1.48637 1.15083 0.86835 0.80988 0.80056 0.81734 1.20084 1.21229 1.19258 0.91073 0.90721 0.88644 0.91700 0.90426 0.91696 0.91566 0.91720 0.91040 0.84528 0.99767 0.95957 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 10.67 101.05 1.08 -0.27 16 2 S -0.25 -3.77 21.64 -107.50 -2.33 -6.09 16 3 C -0.04 -0.64 3.07 -25.07 -0.08 -0.72 16 4 H 0.10 1.46 8.05 -51.93 -0.42 1.04 16 5 C -0.12 -1.37 6.27 -24.66 -0.15 -1.53 16 6 C -0.12 -1.35 6.83 -25.00 -0.17 -1.52 16 7 C -0.15 -2.15 6.44 -25.62 -0.16 -2.32 16 8 C 0.10 1.76 2.82 -66.59 -0.19 1.58 16 9 H 0.08 1.50 7.46 -51.93 -0.39 1.11 16 10 N -0.67 -13.95 6.20 -106.80 -0.66 -14.61 16 11 C 0.17 4.09 4.34 -4.97 -0.02 4.07 16 12 C -0.51 -14.94 9.87 -34.44 -0.34 -15.28 16 13 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 14 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 15 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 16 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 20 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 21 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 22 H 0.09 0.91 8.14 -51.92 -0.42 0.48 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.08 7.57 -51.93 -0.39 0.69 16 29 H 0.34 6.71 8.15 -39.30 -0.32 6.39 16 30 H -0.02 -0.38 7.20 -51.93 -0.37 -0.75 16 31 H 0.02 0.57 7.49 -51.93 -0.39 0.18 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 273.13 15.07 4.12 4.12 Total: -1.00 -30.85 273.13 -8.15 -39.00 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.25 Total: 1.61 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.14 Total: -14.06 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.11 Total: -41.87 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -2.33 Total: -6.09 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.85 -8.15 -39.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235144000.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.381 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds