Wall clock time and date at job start Mon Mar 30 2020 02:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00088 * 2 1 4 4 H 1.08994 * 110.43346 * 305.70255 * 3 2 1 5 5 C 1.54887 * 110.48413 * 68.24160 * 3 2 1 6 6 C 1.55035 * 102.68333 * 156.51398 * 5 3 2 7 7 C 1.54261 * 104.28027 * 322.23850 * 6 5 3 8 8 C 1.53875 * 106.60321 * 23.50967 * 7 6 5 9 9 H 1.08990 * 110.03736 * 240.71699 * 8 7 6 10 10 N 1.46903 * 110.07023 * 119.30544 * 8 7 6 11 11 C 1.46905 * 110.99484 * 87.81591 * 10 8 7 12 12 C 1.50701 * 109.46895 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00206 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99871 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00076 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00146 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47206 * 89.99923 * 16 14 12 18 18 H 1.48499 * 109.46962 * 210.00081 * 16 14 12 19 19 H 1.48497 * 109.46806 * 329.99539 * 16 14 12 20 20 H 1.09002 * 109.46881 * 299.99990 * 1 2 3 21 21 H 1.09000 * 109.46946 * 60.00038 * 1 2 3 22 22 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 23 23 H 1.09000 * 110.76001 * 274.93377 * 5 3 2 24 24 H 1.09004 * 110.75469 * 38.30826 * 5 3 2 25 25 H 1.08993 * 110.52570 * 203.48585 * 6 5 3 26 26 H 1.09003 * 110.35993 * 80.90161 * 6 5 3 27 27 H 1.09004 * 110.02834 * 264.22637 * 7 6 5 28 28 H 1.08998 * 110.03429 * 142.79902 * 7 6 5 29 29 H 1.00892 * 111.00269 * 323.86053 * 10 8 7 30 30 H 1.08996 * 109.46865 * 299.99369 * 11 10 8 31 31 H 1.09000 * 109.47272 * 59.99776 * 11 10 8 32 32 H 0.96996 * 120.00352 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7269 2.2724 -0.8294 5 6 1.8199 2.4166 1.3476 6 6 2.7447 3.6590 1.4163 7 6 4.0817 3.1716 0.8208 8 6 3.7495 1.9689 -0.0796 9 1 4.2629 1.0783 0.2824 10 7 4.1482 2.2510 -1.4651 11 6 5.5479 1.8704 -1.6978 12 6 5.9198 2.1732 -3.1265 13 1 5.1894 2.6048 -3.7948 14 6 7.1926 1.8992 -3.5803 15 7 7.5171 2.1630 -4.8273 16 14 8.4557 1.1521 -2.4246 17 1 8.3788 -0.3291 -2.4980 18 1 9.8153 1.5976 -2.8225 19 1 8.1772 1.5940 -1.0345 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 0.7711 2.7133 1.3358 24 1 2.0218 1.7398 2.1778 25 1 2.8808 3.9774 2.4498 26 1 2.3337 4.4714 0.8168 27 1 4.7565 2.8647 1.6200 28 1 4.5388 3.9654 0.2300 29 1 3.9942 3.2211 -1.6953 30 1 6.1944 2.4351 -1.0262 31 1 5.6707 0.8039 -1.5090 32 1 8.4123 1.9700 -5.1467 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235144000.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:26 Heat of formation + Delta-G solvation = -33.326213 kcal Electronic energy + Delta-G solvation = -12611.644637 eV Core-core repulsion = 10503.776214 eV Total energy + Delta-G solvation = -2107.868423 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.59908 -35.90776 -34.13985 -30.25775 -30.00500 -29.17587 -26.93738 -23.34190 -21.74231 -21.24052 -18.98223 -17.81819 -16.67694 -16.45967 -15.94361 -15.29646 -15.06512 -14.75304 -14.49680 -14.16755 -14.01627 -13.78820 -13.33629 -12.90936 -12.60567 -12.28036 -12.21238 -12.03519 -11.85015 -11.77996 -11.55219 -11.43428 -10.83168 -10.71266 -9.12077 -8.57887 -8.32242 -6.36509 0.84703 1.32649 1.34011 1.44742 1.77211 2.31745 3.01705 3.32237 3.53189 3.87049 4.04531 4.35268 4.39263 4.39540 4.41809 4.45615 4.55854 4.68149 4.79458 4.90491 4.94615 5.00816 5.10589 5.14105 5.18845 5.38303 5.50338 5.94808 6.53923 6.63759 6.75197 7.28468 8.84499 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.036388 B = 0.007667 C = 0.007039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.300384 B = 3650.949494 C = 3976.825356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.319 6.319 3 C -0.032 4.032 4 H 0.087 0.913 5 C -0.107 4.107 6 C -0.109 4.109 7 C -0.149 4.149 8 C 0.098 3.902 9 H 0.062 0.938 10 N -0.680 5.680 11 C 0.181 3.819 12 C -0.527 4.527 13 H 0.038 0.962 14 C 0.010 3.990 15 N -0.946 5.946 16 Si 0.948 3.052 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.251 1.251 20 H 0.093 0.907 21 H 0.077 0.923 22 H 0.108 0.892 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.339 0.661 30 H -0.011 1.011 31 H 0.014 0.986 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.612 0.413 16.096 20.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.091 6.091 3 C -0.162 4.162 4 H 0.106 0.894 5 C -0.147 4.147 6 C -0.148 4.148 7 C -0.189 4.189 8 C -0.013 4.013 9 H 0.080 0.920 10 N -0.311 5.311 11 C 0.052 3.948 12 C -0.566 4.566 13 H 0.056 0.944 14 C -0.188 4.188 15 N -0.586 5.586 16 Si 0.771 3.229 17 H -0.194 1.194 18 H -0.202 1.202 19 H -0.175 1.175 20 H 0.112 0.888 21 H 0.096 0.904 22 H 0.127 0.873 23 H 0.107 0.893 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.158 0.842 30 H 0.007 0.993 31 H 0.032 0.968 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.064 -1.112 15.681 19.816 hybrid contribution 0.544 1.257 0.038 1.370 sum -11.520 0.145 15.719 19.489 Atomic orbital electron populations 1.23372 0.91246 1.07172 1.05661 1.87191 1.10676 1.13319 1.97938 1.23995 0.98373 0.92054 1.01758 0.89437 1.22877 1.00477 0.96940 0.94423 1.22306 0.93346 0.97282 1.01905 1.22874 0.99378 0.97127 0.99546 1.22007 0.93335 0.97769 0.88200 0.92020 1.60361 1.22680 1.26544 1.21484 1.19686 0.85926 0.94802 0.94356 1.21325 0.97301 1.41651 0.96280 0.94367 1.25849 1.00548 0.95679 0.96730 1.70046 1.21288 1.50028 1.17277 0.85698 0.78000 0.79185 0.79969 1.19412 1.20225 1.17469 0.88842 0.90386 0.87323 0.89260 0.89990 0.89342 0.90825 0.91116 0.92127 0.84244 0.99300 0.96774 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 10.67 113.37 1.21 -0.80 16 2 S -0.32 -9.33 21.64 -56.49 -1.22 -10.55 16 3 C -0.03 -0.90 3.07 31.67 0.10 -0.80 16 4 H 0.09 2.56 8.05 -2.39 -0.02 2.54 16 5 C -0.11 -2.12 6.27 31.94 0.20 -1.92 16 6 C -0.11 -2.13 6.83 31.72 0.22 -1.92 16 7 C -0.15 -4.01 6.44 31.32 0.20 -3.80 16 8 C 0.10 3.29 2.82 45.64 0.13 3.42 16 9 H 0.06 2.29 7.46 -2.39 -0.02 2.28 16 10 N -0.68 -28.67 6.20 -491.82 -3.05 -31.72 16 11 C 0.18 8.99 4.34 85.56 0.37 9.37 16 12 C -0.53 -31.49 9.87 25.60 0.25 -31.24 16 13 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 14 C 0.01 0.57 5.47 84.65 0.46 1.04 16 15 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 16 Si 0.95 45.35 27.47 68.60 1.88 47.24 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 20 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.08 1.59 8.05 -2.38 -0.02 1.57 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.06 1.76 7.57 -2.39 -0.02 1.75 16 29 H 0.34 13.77 8.15 -89.70 -0.73 13.04 16 30 H -0.01 -0.52 7.20 -2.39 -0.02 -0.53 16 31 H 0.01 0.73 7.49 -2.39 -0.02 0.71 16 32 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -68.14 273.13 1.35 -66.79 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.29 Total: 14.84 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 3.14 Total: -26.66 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -2.75 Total: -91.65 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.24 kcal Atomic # 16 Polarization: -9.33 SS G_CDS: -1.22 Total: -10.55 kcal Total: -68.14 1.35 -66.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235144000.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.464 kcal (2) G-P(sol) polarization free energy of solvation -68.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds