Wall clock time and date at job start Mon Mar 30 2020 02:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81405 * 102.99746 * 2 1 4 4 H 1.08999 * 109.47044 * 54.99981 * 3 2 1 5 5 C 1.52996 * 109.47380 * 294.99923 * 3 2 1 6 6 C 1.53001 * 109.47264 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46925 * 59.99873 * 6 5 3 8 8 C 1.52996 * 109.47389 * 299.99590 * 7 6 5 9 9 H 1.08999 * 109.47454 * 300.00556 * 8 7 6 10 10 N 1.46499 * 109.47169 * 180.02562 * 8 7 6 11 11 C 1.36931 * 120.00122 * 85.00412 * 10 8 7 12 12 H 1.08002 * 120.00098 * 0.02562 * 11 10 8 13 13 C 1.38812 * 120.00429 * 180.02562 * 11 10 8 14 14 N 1.31624 * 119.99535 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00187 * 180.27849 * 13 11 10 16 16 H 1.48501 * 109.46922 * 269.71949 * 15 13 11 17 17 H 1.48496 * 109.47354 * 29.72145 * 15 13 11 18 18 H 1.48501 * 109.47428 * 149.72253 * 15 13 11 19 19 C 1.53005 * 109.46872 * 174.99773 * 3 2 1 20 20 H 1.08997 * 109.47497 * 60.00186 * 1 2 3 21 21 H 1.09004 * 109.47395 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47542 * 299.99985 * 1 2 3 23 23 H 1.09005 * 109.46772 * 59.99927 * 5 3 2 24 24 H 1.08999 * 109.47079 * 300.00036 * 5 3 2 25 25 H 1.08999 * 109.46935 * 299.99919 * 6 5 3 26 26 H 1.08995 * 109.47084 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.46971 * 180.02562 * 7 6 5 28 28 H 1.08999 * 109.47276 * 60.00256 * 7 6 5 29 29 H 0.97001 * 119.99790 * 264.99929 * 10 8 7 30 30 H 0.97005 * 119.99717 * 180.02562 * 14 13 11 31 31 H 1.08999 * 109.47117 * 60.00252 * 19 3 2 32 32 H 1.09002 * 109.47054 * 299.99637 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 1 1.7293 2.2542 0.8418 5 6 1.7427 2.4017 -1.3073 6 6 2.0874 3.8923 -1.3075 7 6 3.6023 4.0654 -1.1821 8 6 4.0816 3.4315 0.1253 9 1 3.5893 3.9183 0.9671 10 7 5.5321 3.5978 0.2457 11 6 6.0477 4.7529 0.7700 12 1 5.3849 5.5413 1.0952 13 6 7.4221 4.9108 0.8836 14 7 8.2298 3.9499 0.4878 15 14 8.1251 6.4835 1.6060 16 1 8.3580 7.4670 0.5181 17 1 7.1655 7.0494 2.5879 18 1 9.4107 6.1843 2.2863 19 6 3.7369 1.9413 0.1258 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.6634 2.2779 -1.3968 24 1 2.2353 1.9151 -2.1491 25 1 1.5951 4.3792 -0.4657 26 1 1.7455 4.3441 -2.2387 27 1 3.8479 5.1274 -1.1818 28 1 4.0947 3.5786 -2.0239 29 1 6.1273 2.8896 -0.0460 30 1 9.1903 4.0600 0.5675 31 1 4.2295 1.4547 -0.7160 32 1 4.0783 1.4896 1.0572 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235227547.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:40 Heat of formation + Delta-G solvation = -13.724061 kcal Electronic energy + Delta-G solvation = -12708.605937 eV Core-core repulsion = 10601.587527 eV Total energy + Delta-G solvation = -2107.018410 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.17928 -34.02684 -31.24712 -30.45361 -29.06472 -27.74144 -23.72925 -22.27641 -21.17326 -19.46574 -17.07504 -16.31614 -15.05099 -14.49875 -14.23731 -14.05353 -13.68006 -13.42936 -13.35941 -12.84746 -12.53417 -12.12934 -11.69979 -11.24995 -10.98907 -10.84642 -10.74264 -10.38615 -10.26216 -10.16312 -9.93117 -9.59608 -9.41850 -8.85527 -7.61029 -6.94323 -5.74918 -3.03750 1.77499 2.67672 3.44488 3.49516 3.51349 4.58385 4.86461 4.91414 5.07125 5.08911 5.30087 5.46667 5.53725 5.60940 5.69893 5.71756 5.83298 5.94511 6.00887 6.08446 6.30110 6.37079 6.52256 6.58717 6.71868 6.96744 7.12773 7.71267 8.43595 9.54593 10.12430 10.47327 11.47808 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.055383 B = 0.006633 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.449077 B = 4220.204110 C = 4493.854400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.275 6.275 3 C -0.039 4.039 4 H 0.084 0.916 5 C -0.110 4.110 6 C -0.114 4.114 7 C -0.137 4.137 8 C 0.186 3.814 9 H 0.046 0.954 10 N -0.724 5.724 11 C -0.238 4.238 12 H 0.070 0.930 13 C -0.014 4.014 14 N -0.933 5.933 15 Si 0.906 3.094 16 H -0.290 1.290 17 H -0.282 1.282 18 H -0.291 1.291 19 C -0.103 4.103 20 H 0.074 0.926 21 H 0.095 0.905 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.068 0.932 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.190 -4.557 -2.555 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.046 6.046 3 C -0.168 4.168 4 H 0.103 0.897 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.177 4.177 8 C 0.074 3.926 9 H 0.064 0.936 10 N -0.364 5.364 11 C -0.369 4.369 12 H 0.088 0.912 13 C -0.210 4.210 14 N -0.581 5.581 15 Si 0.737 3.263 16 H -0.218 1.218 17 H -0.208 1.208 18 H -0.218 1.218 19 C -0.143 4.143 20 H 0.093 0.907 21 H 0.114 0.886 22 H 0.092 0.908 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.479 -5.333 -2.425 15.619 hybrid contribution -0.229 1.634 0.253 1.669 sum -14.707 -3.699 -2.173 15.320 Atomic orbital electron populations 1.23343 0.95147 1.05900 1.04641 1.86935 1.06371 1.13389 1.97929 1.23210 1.01147 0.91536 1.00898 0.89738 1.21840 0.99786 0.96678 0.96623 1.21555 0.98098 0.94676 1.01101 1.22285 0.92910 1.01918 1.00628 1.20138 0.86661 0.91066 0.94741 0.93564 1.42407 0.99609 1.19376 1.75028 1.19237 0.90315 0.94251 1.33137 0.91190 1.24744 0.96058 0.98053 1.02105 1.69670 1.02651 1.32536 1.53255 0.86201 0.78483 0.82931 0.78650 1.21751 1.20778 1.21779 1.21650 0.90611 0.99036 1.02988 0.90681 0.88591 0.90809 0.92745 0.90899 0.92429 0.92420 0.91875 0.92508 0.78234 0.93509 0.91338 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.45 101.05 1.06 -0.13 16 2 S -0.28 -3.77 21.79 -107.50 -2.34 -6.11 16 3 C -0.04 -0.55 2.65 -26.73 -0.07 -0.62 16 4 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 5 C -0.11 -1.42 5.11 -26.73 -0.14 -1.55 16 6 C -0.11 -1.57 5.92 -26.73 -0.16 -1.73 16 7 C -0.14 -2.43 5.50 -26.73 -0.15 -2.57 16 8 C 0.19 3.69 2.77 -67.95 -0.19 3.50 16 9 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 10 N -0.72 -18.27 5.12 -53.45 -0.27 -18.54 16 11 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 12 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 13 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 14 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 15 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 19 C -0.10 -1.79 4.68 -26.75 -0.13 -1.91 16 20 H 0.07 0.66 7.14 -51.93 -0.37 0.29 16 21 H 0.10 0.81 8.14 -51.92 -0.42 0.38 16 22 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 23 H 0.05 0.60 6.92 -51.93 -0.36 0.24 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.38 10.36 7.80 -40.82 -0.32 10.04 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 270.86 15.07 4.08 4.08 Total: -1.00 -29.62 270.86 -8.09 -37.71 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.24 Total: 5.39 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -0.02 Total: -12.29 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.45 Total: -46.23 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -2.34 Total: -6.11 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.62 -8.09 -37.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235227547.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.990 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds