Wall clock time and date at job start Mon Mar 30 2020 02:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81405 * 102.99746 * 2 1 4 4 H 1.08999 * 109.47044 * 54.99981 * 3 2 1 5 5 C 1.52996 * 109.47380 * 294.99923 * 3 2 1 6 6 C 1.53001 * 109.47264 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46925 * 59.99873 * 6 5 3 8 8 C 1.52996 * 109.47389 * 299.99590 * 7 6 5 9 9 H 1.08999 * 109.47454 * 300.00556 * 8 7 6 10 10 N 1.46499 * 109.47169 * 180.02562 * 8 7 6 11 11 C 1.36931 * 120.00122 * 85.00412 * 10 8 7 12 12 H 1.08002 * 120.00098 * 0.02562 * 11 10 8 13 13 C 1.38812 * 120.00429 * 180.02562 * 11 10 8 14 14 N 1.31624 * 119.99535 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00187 * 180.27849 * 13 11 10 16 16 H 1.48501 * 109.46922 * 269.71949 * 15 13 11 17 17 H 1.48496 * 109.47354 * 29.72145 * 15 13 11 18 18 H 1.48501 * 109.47428 * 149.72253 * 15 13 11 19 19 C 1.53005 * 109.46872 * 174.99773 * 3 2 1 20 20 H 1.08997 * 109.47497 * 60.00186 * 1 2 3 21 21 H 1.09004 * 109.47395 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47542 * 299.99985 * 1 2 3 23 23 H 1.09005 * 109.46772 * 59.99927 * 5 3 2 24 24 H 1.08999 * 109.47079 * 300.00036 * 5 3 2 25 25 H 1.08999 * 109.46935 * 299.99919 * 6 5 3 26 26 H 1.08995 * 109.47084 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.46971 * 180.02562 * 7 6 5 28 28 H 1.08999 * 109.47276 * 60.00256 * 7 6 5 29 29 H 0.97001 * 119.99790 * 264.99929 * 10 8 7 30 30 H 0.97005 * 119.99717 * 180.02562 * 14 13 11 31 31 H 1.08999 * 109.47117 * 60.00252 * 19 3 2 32 32 H 1.09002 * 109.47054 * 299.99637 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 1 1.7293 2.2542 0.8418 5 6 1.7427 2.4017 -1.3073 6 6 2.0874 3.8923 -1.3075 7 6 3.6023 4.0654 -1.1821 8 6 4.0816 3.4315 0.1253 9 1 3.5893 3.9183 0.9671 10 7 5.5321 3.5978 0.2457 11 6 6.0477 4.7529 0.7700 12 1 5.3849 5.5413 1.0952 13 6 7.4221 4.9108 0.8836 14 7 8.2298 3.9499 0.4878 15 14 8.1251 6.4835 1.6060 16 1 8.3580 7.4670 0.5181 17 1 7.1655 7.0494 2.5879 18 1 9.4107 6.1843 2.2863 19 6 3.7369 1.9413 0.1258 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.6634 2.2779 -1.3968 24 1 2.2353 1.9151 -2.1491 25 1 1.5951 4.3792 -0.4657 26 1 1.7455 4.3441 -2.2387 27 1 3.8479 5.1274 -1.1818 28 1 4.0947 3.5786 -2.0239 29 1 6.1273 2.8896 -0.0460 30 1 9.1903 4.0600 0.5675 31 1 4.2295 1.4547 -0.7160 32 1 4.0783 1.4896 1.0572 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235227547.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:40 Heat of formation + Delta-G solvation = -31.363538 kcal Electronic energy + Delta-G solvation = -12709.370842 eV Core-core repulsion = 10601.587527 eV Total energy + Delta-G solvation = -2107.783315 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.58360 -35.87389 -33.12406 -31.74346 -30.13470 -29.18164 -25.70623 -23.59056 -22.61703 -20.88042 -19.13262 -17.57020 -16.55238 -16.10751 -15.65316 -15.32993 -15.19636 -14.75765 -14.40062 -14.21127 -13.84276 -13.47719 -13.01931 -12.87633 -12.71027 -12.46687 -12.21828 -12.04898 -11.98812 -11.57621 -11.50825 -11.21482 -10.89737 -10.56909 -9.01224 -8.66871 -7.94080 -5.23091 0.76254 1.47104 1.49026 1.57371 1.72017 2.56244 3.39066 3.59741 3.72518 4.02791 4.24140 4.27415 4.37856 4.39517 4.43628 4.49611 4.56496 4.58836 4.72174 4.90831 5.05543 5.11166 5.16390 5.23231 5.31567 5.49175 5.50908 5.63313 6.28048 7.33365 8.09213 8.32591 9.29818 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.055383 B = 0.006633 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.449077 B = 4220.204110 C = 4493.854400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 S -0.322 6.322 3 C -0.029 4.029 4 H 0.092 0.908 5 C -0.103 4.103 6 C -0.105 4.105 7 C -0.129 4.129 8 C 0.181 3.819 9 H 0.043 0.957 10 N -0.739 5.739 11 C -0.238 4.238 12 H 0.077 0.923 13 C -0.078 4.078 14 N -0.972 5.972 15 Si 0.973 3.027 16 H -0.287 1.287 17 H -0.268 1.268 18 H -0.296 1.296 19 C -0.092 4.092 20 H 0.090 0.910 21 H 0.111 0.889 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.371 0.629 30 H 0.250 0.750 31 H 0.056 0.944 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.766 -4.058 -2.652 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.094 6.094 3 C -0.158 4.158 4 H 0.110 0.890 5 C -0.142 4.142 6 C -0.145 4.145 7 C -0.169 4.169 8 C 0.071 3.929 9 H 0.061 0.939 10 N -0.379 5.379 11 C -0.370 4.370 12 H 0.094 0.906 13 C -0.270 4.270 14 N -0.623 5.623 15 Si 0.802 3.198 16 H -0.214 1.214 17 H -0.193 1.193 18 H -0.223 1.223 19 C -0.132 4.132 20 H 0.109 0.891 21 H 0.130 0.870 22 H 0.103 0.897 23 H 0.104 0.896 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.202 0.798 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.116 -4.821 -2.524 17.960 hybrid contribution 0.472 1.409 0.281 1.512 sum -16.644 -3.412 -2.244 17.137 Atomic orbital electron populations 1.23431 0.90740 1.07386 1.05953 1.87132 1.11177 1.12956 1.98087 1.23037 0.98344 0.92239 1.02179 0.88956 1.21812 1.01565 0.95506 0.95341 1.21491 0.94483 0.95747 1.02759 1.22105 0.96221 1.00093 0.98524 1.20368 0.83784 0.93052 0.95711 0.93876 1.42644 1.01817 1.18366 1.75038 1.19629 0.90665 0.94942 1.31766 0.90554 1.25575 0.96577 1.01335 1.03481 1.69836 1.02491 1.34678 1.55320 0.85140 0.77476 0.79173 0.77996 1.21380 1.19312 1.22318 1.21433 0.93465 0.96764 1.01518 0.89125 0.87048 0.89674 0.89631 0.91525 0.91293 0.90240 0.93749 0.93693 0.79809 0.94075 0.92532 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.45 113.37 1.18 -0.50 16 2 S -0.32 -8.26 21.79 -56.49 -1.23 -9.49 16 3 C -0.03 -0.77 2.65 30.59 0.08 -0.69 16 4 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 5 C -0.10 -2.34 5.11 30.59 0.16 -2.18 16 6 C -0.10 -2.59 5.92 30.59 0.18 -2.41 16 7 C -0.13 -4.51 5.50 30.59 0.17 -4.34 16 8 C 0.18 7.21 2.77 44.98 0.12 7.34 16 9 H 0.04 1.74 8.08 -2.39 -0.02 1.73 16 10 N -0.74 -38.31 5.12 -323.02 -1.65 -39.96 16 11 C -0.24 -13.42 9.93 84.03 0.83 -12.59 16 12 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 13 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 14 N -0.97 -60.81 13.06 21.65 0.28 -60.53 16 15 Si 0.97 46.66 29.55 68.60 2.03 48.68 16 16 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 19 C -0.09 -3.22 4.68 30.58 0.14 -3.08 16 20 H 0.09 1.18 7.14 -2.39 -0.02 1.16 16 21 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.09 1.48 6.92 -2.38 -0.02 1.47 16 24 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.37 20.83 7.80 -92.71 -0.72 20.11 16 30 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -64.67 270.86 3.12 -61.54 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.36 Total: 22.27 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 3.34 Total: -22.52 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -1.37 Total: -100.49 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.23 Total: -9.49 kcal Total: -64.67 3.12 -61.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235227547.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.179 kcal (2) G-P(sol) polarization free energy of solvation -64.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds