Wall clock time and date at job start Mon Mar 30 2020 03:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.46919 * 2 1 4 4 C 1.50703 * 109.46623 * 240.00133 * 2 1 3 5 5 H 1.07998 * 119.99664 * 239.99217 * 4 2 1 6 6 C 1.37872 * 120.00355 * 60.00102 * 4 2 1 7 7 N 1.31521 * 119.99601 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00244 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47027 * 89.99976 * 8 6 4 10 10 H 1.48500 * 109.47009 * 210.00174 * 8 6 4 11 11 H 1.48502 * 109.47152 * 329.99631 * 8 6 4 12 12 N 1.46902 * 109.47008 * 120.00203 * 2 1 3 13 13 C 1.47009 * 111.00266 * 58.63770 * 12 2 1 14 14 C 1.53095 * 109.26123 * 177.60617 * 13 12 2 15 15 O 1.43018 * 109.25914 * 56.84468 * 14 13 12 16 16 C 1.43016 * 113.73793 * 301.33482 * 15 14 13 17 17 C 1.47010 * 111.00058 * 294.99762 * 12 2 1 18 18 H 1.08997 * 109.54142 * 62.43736 * 17 12 2 19 19 C 1.52999 * 109.50873 * 302.33106 * 17 12 2 20 20 O 1.42903 * 109.47256 * 295.22090 * 19 17 12 21 21 H 1.08992 * 109.47464 * 59.99670 * 1 2 3 22 22 H 1.09001 * 109.46987 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46828 * 299.99598 * 1 2 3 24 24 H 0.97002 * 119.99826 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.50737 * 57.66937 * 13 12 2 26 26 H 1.09007 * 109.50686 * 297.54161 * 13 12 2 27 27 H 1.09004 * 109.50426 * 296.91227 * 14 13 12 28 28 H 1.08994 * 109.51204 * 176.78016 * 14 13 12 29 29 H 1.09003 * 109.50698 * 298.73214 * 16 15 14 30 30 H 1.08993 * 109.54385 * 178.62772 * 16 15 14 31 31 H 1.08997 * 109.47286 * 175.21650 * 19 17 12 32 32 H 1.09008 * 109.47201 * 55.21431 * 19 17 12 33 33 H 0.96700 * 114.00311 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3223 -1.1196 -4.0080 9 1 1.3445 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1120 11 1 3.6307 -1.7566 -3.7121 12 7 2.0197 -0.6925 1.1994 13 6 1.5219 -2.0749 1.2498 14 6 2.1027 -2.7763 2.4804 15 8 1.7583 -2.0336 3.6532 16 6 2.2281 -0.6829 3.6379 17 6 1.6485 0.0396 2.4190 18 1 0.5626 0.0813 2.5029 19 6 2.2106 1.4611 2.3526 20 8 3.6387 1.4093 2.3578 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 0.7086 1.1613 -3.4843 25 1 1.8299 -2.6058 0.3490 26 1 0.4338 -2.0678 1.3147 27 1 3.1876 -2.8310 2.3899 28 1 1.6917 -3.7831 2.5535 29 1 3.3166 -0.6768 3.5811 30 1 1.9084 -0.1754 4.5480 31 1 1.8645 2.0294 3.2159 32 1 1.8680 1.9450 1.4379 33 1 4.0639 2.2769 2.3179 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253072613.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:20 Heat of formation + Delta-G solvation = -82.165420 kcal Electronic energy + Delta-G solvation = -15732.413935 eV Core-core repulsion = 13179.674815 eV Total energy + Delta-G solvation = -2552.739121 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.30137 -36.39199 -35.47567 -32.61671 -31.07683 -29.25768 -26.24139 -25.24746 -25.19322 -21.91217 -21.03582 -18.59828 -17.05073 -16.37150 -15.88972 -15.47702 -14.62257 -14.44155 -14.36886 -13.68875 -13.20224 -12.91288 -12.69553 -12.40572 -11.76066 -11.31569 -11.07427 -10.89765 -10.75648 -10.56322 -10.46305 -10.29032 -9.99303 -9.70876 -9.62442 -8.86708 -8.81816 -8.35760 -7.12713 -6.02472 -4.05377 3.30004 3.36686 3.41229 4.30833 4.39911 4.72933 4.85698 5.28866 5.39041 5.56172 5.62565 5.71314 5.83509 5.89287 5.93853 6.19328 6.24463 6.40163 6.58128 6.60854 6.76480 6.83553 7.09914 7.43296 7.60348 7.68728 7.81922 8.08060 8.13275 8.36033 8.58634 8.99833 9.59291 11.04849 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034724 B = 0.010409 C = 0.009287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.166312 B = 2689.205250 C = 3014.091112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.208 3.792 3 H 0.046 0.954 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.514 5.514 13 C 0.025 3.975 14 C 0.062 3.938 15 O -0.397 6.397 16 C 0.074 3.926 17 C 0.047 3.953 18 H 0.052 0.948 19 C 0.085 3.915 20 O -0.555 6.555 21 H 0.089 0.911 22 H 0.030 0.970 23 H 0.006 0.994 24 H 0.260 0.740 25 H 0.092 0.908 26 H 0.033 0.967 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.196 -0.462 8.796 8.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.102 3.898 3 H 0.064 0.936 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.239 5.239 13 C -0.103 4.103 14 C -0.015 4.015 15 O -0.315 6.315 16 C -0.003 4.003 17 C -0.063 4.063 18 H 0.069 0.931 19 C 0.006 3.994 20 O -0.358 6.358 21 H 0.107 0.893 22 H 0.049 0.951 23 H 0.025 0.975 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 1.416 -1.092 8.809 8.989 hybrid contribution -0.536 0.425 -1.196 1.377 sum 0.880 -0.667 7.613 7.693 Atomic orbital electron populations 1.22433 1.01065 0.99431 1.00428 1.19382 0.89453 0.95016 0.85924 0.93643 1.21098 1.30386 1.12424 0.89650 0.92001 1.24917 0.95252 0.95146 0.98982 1.69882 1.37192 1.23106 1.23373 0.86519 0.79262 0.79271 0.82499 1.20844 1.21312 1.19829 1.62569 1.58878 1.00915 1.01530 1.22645 0.97456 0.91801 0.98422 1.22738 0.99556 0.94389 0.84811 1.87860 1.79026 1.23927 1.40723 1.22543 0.99304 0.81888 0.96517 1.22269 0.97246 0.93458 0.93315 0.93060 1.22199 0.81534 0.96059 0.99563 1.86592 1.18638 1.33141 1.97423 0.89270 0.95093 0.97494 0.93043 0.88963 0.94840 0.92829 0.89572 0.91682 0.89978 0.94565 0.92223 0.78734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.26 37.16 0.31 -3.92 16 2 C 0.21 5.21 2.05 -68.86 -0.14 5.07 16 3 H 0.05 1.24 5.89 -51.93 -0.31 0.93 16 4 C -0.50 -13.59 7.91 -34.44 -0.27 -13.86 16 5 H 0.06 1.70 6.78 -52.49 -0.36 1.35 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.51 -11.32 4.46 -219.80 -0.98 -12.30 16 13 C 0.03 0.51 4.91 -3.72 -0.02 0.49 16 14 C 0.06 1.08 7.01 37.21 0.26 1.34 16 15 O -0.40 -7.24 10.83 -35.23 -0.38 -7.62 16 16 C 0.07 1.29 6.15 37.21 0.23 1.51 16 17 C 0.05 0.89 2.03 -67.60 -0.14 0.75 16 18 H 0.05 1.01 6.56 -51.93 -0.34 0.67 16 19 C 0.08 1.45 6.41 37.16 0.24 1.69 16 20 O -0.55 -9.44 12.67 -35.23 -0.45 -9.89 16 21 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 22 H 0.03 0.73 6.43 -51.93 -0.33 0.40 16 23 H 0.01 0.14 6.58 -51.93 -0.34 -0.20 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.09 1.97 6.49 -51.93 -0.34 1.63 16 26 H 0.03 0.70 6.42 -51.93 -0.33 0.37 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 1.18 7.46 -51.93 -0.39 0.79 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 1.13 6.01 -51.92 -0.31 0.82 16 33 H 0.37 4.44 9.12 45.56 0.42 4.85 16 LS Contribution 254.86 15.07 3.84 3.84 Total: -1.00 -30.17 254.86 -5.76 -35.93 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -3.77 Total: 3.82 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 0.37 Total: -5.43 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: -0.35 Total: -36.99 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.83 Total: -17.51 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.17 -5.76 -35.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253072613.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.232 kcal (2) G-P(sol) polarization free energy of solvation -30.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds