Wall clock time and date at job start Mon Mar 30 2020 03:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.46919 * 2 1 4 4 C 1.50703 * 109.46623 * 240.00133 * 2 1 3 5 5 H 1.07998 * 119.99664 * 239.99217 * 4 2 1 6 6 C 1.37872 * 120.00355 * 60.00102 * 4 2 1 7 7 N 1.31521 * 119.99601 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00244 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47027 * 89.99976 * 8 6 4 10 10 H 1.48500 * 109.47009 * 210.00174 * 8 6 4 11 11 H 1.48502 * 109.47152 * 329.99631 * 8 6 4 12 12 N 1.46902 * 109.47008 * 120.00203 * 2 1 3 13 13 C 1.47009 * 111.00266 * 58.63770 * 12 2 1 14 14 C 1.53095 * 109.26123 * 177.60617 * 13 12 2 15 15 O 1.43018 * 109.25914 * 56.84468 * 14 13 12 16 16 C 1.43016 * 113.73793 * 301.33482 * 15 14 13 17 17 C 1.47010 * 111.00058 * 294.99762 * 12 2 1 18 18 H 1.08997 * 109.54142 * 62.43736 * 17 12 2 19 19 C 1.52999 * 109.50873 * 302.33106 * 17 12 2 20 20 O 1.42903 * 109.47256 * 295.22090 * 19 17 12 21 21 H 1.08992 * 109.47464 * 59.99670 * 1 2 3 22 22 H 1.09001 * 109.46987 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46828 * 299.99598 * 1 2 3 24 24 H 0.97002 * 119.99826 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.50737 * 57.66937 * 13 12 2 26 26 H 1.09007 * 109.50686 * 297.54161 * 13 12 2 27 27 H 1.09004 * 109.50426 * 296.91227 * 14 13 12 28 28 H 1.08994 * 109.51204 * 176.78016 * 14 13 12 29 29 H 1.09003 * 109.50698 * 298.73214 * 16 15 14 30 30 H 1.08993 * 109.54385 * 178.62772 * 16 15 14 31 31 H 1.08997 * 109.47286 * 175.21650 * 19 17 12 32 32 H 1.09008 * 109.47201 * 55.21431 * 19 17 12 33 33 H 0.96700 * 114.00311 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3223 -1.1196 -4.0080 9 1 1.3445 -2.1615 -4.4124 10 1 2.4871 -0.1402 -5.1120 11 1 3.6307 -1.7566 -3.7121 12 7 2.0197 -0.6925 1.1994 13 6 1.5219 -2.0749 1.2498 14 6 2.1027 -2.7763 2.4804 15 8 1.7583 -2.0336 3.6532 16 6 2.2281 -0.6829 3.6379 17 6 1.6485 0.0396 2.4190 18 1 0.5626 0.0813 2.5029 19 6 2.2106 1.4611 2.3526 20 8 3.6387 1.4093 2.3578 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 0.7086 1.1613 -3.4843 25 1 1.8299 -2.6058 0.3490 26 1 0.4338 -2.0678 1.3147 27 1 3.1876 -2.8310 2.3899 28 1 1.6917 -3.7831 2.5535 29 1 3.3166 -0.6768 3.5811 30 1 1.9084 -0.1754 4.5480 31 1 1.8645 2.0294 3.2159 32 1 1.8680 1.9450 1.4379 33 1 4.0639 2.2769 2.3179 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253072613.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:20 Heat of formation + Delta-G solvation = -106.720694 kcal Electronic energy + Delta-G solvation = -15733.478732 eV Core-core repulsion = 13179.674815 eV Total energy + Delta-G solvation = -2553.803917 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.83578 -37.80992 -37.08410 -34.56628 -32.55124 -31.10236 -27.80817 -27.24862 -26.75190 -23.39731 -22.81514 -20.23249 -18.59376 -18.11048 -17.47410 -17.09124 -16.39654 -15.99981 -15.82385 -15.37233 -14.62814 -14.62407 -14.45051 -13.92149 -13.67290 -12.97489 -12.72358 -12.68557 -12.63879 -12.36383 -12.06007 -12.01431 -11.94172 -11.24057 -11.00452 -10.77143 -10.54191 -10.25963 -8.85721 -8.11904 -6.21619 1.40975 1.42239 1.52698 2.41868 2.94382 3.16804 3.21636 3.51429 3.95934 4.13335 4.20809 4.29591 4.43020 4.50284 4.55701 4.70939 4.78915 4.82943 4.85207 4.98300 5.02559 5.08095 5.20368 5.52400 5.68910 5.77055 6.16328 6.21666 6.45110 6.71079 6.90563 7.03076 7.46978 8.94337 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.034724 B = 0.010409 C = 0.009287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.166312 B = 2689.205250 C = 3014.091112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 H 0.020 0.980 4 C -0.514 4.514 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.957 3.043 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.526 5.526 13 C 0.025 3.975 14 C 0.069 3.931 15 O -0.401 6.401 16 C 0.080 3.920 17 C 0.040 3.960 18 H 0.046 0.954 19 C 0.089 3.911 20 O -0.572 6.572 21 H 0.063 0.937 22 H 0.027 0.973 23 H 0.024 0.976 24 H 0.261 0.739 25 H 0.076 0.924 26 H 0.025 0.975 27 H 0.054 0.946 28 H 0.117 0.883 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -0.951 9.795 9.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.108 3.892 3 H 0.038 0.962 4 C -0.553 4.553 5 H 0.072 0.928 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.251 5.251 13 C -0.103 4.103 14 C -0.008 4.008 15 O -0.320 6.320 16 C 0.003 3.997 17 C -0.070 4.070 18 H 0.064 0.936 19 C 0.011 3.989 20 O -0.379 6.379 21 H 0.082 0.918 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.094 0.906 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.134 0.866 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.765 -1.574 9.824 10.105 hybrid contribution -0.626 0.612 -1.464 1.706 sum 1.139 -0.962 8.360 8.492 Atomic orbital electron populations 1.22224 1.00739 0.98957 0.99933 1.19111 0.89507 0.93741 0.86832 0.96188 1.21364 1.30466 1.12401 0.91033 0.92829 1.25649 0.95429 0.95821 1.01690 1.70001 1.37924 1.24133 1.23959 0.85563 0.78768 0.78276 0.79057 1.20186 1.20930 1.19578 1.62478 1.59137 1.01726 1.01738 1.22657 0.97044 0.91190 0.99418 1.22757 0.99565 0.95267 0.83172 1.87863 1.79097 1.24368 1.40660 1.22608 0.98758 0.81519 0.96804 1.22452 0.97231 0.94610 0.92663 0.93632 1.22112 0.81723 0.95049 0.99980 1.86525 1.18603 1.35301 1.97432 0.91846 0.95389 0.95752 0.92999 0.90595 0.95667 0.92773 0.86554 0.92406 0.86764 0.90599 0.94900 0.76327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.80 8.26 71.98 0.59 -7.21 16 2 C 0.21 10.91 2.05 44.17 0.09 11.00 16 3 H 0.02 1.13 5.89 -2.39 -0.01 1.12 16 4 C -0.51 -28.49 7.91 25.60 0.20 -28.29 16 5 H 0.05 2.99 6.78 -2.91 -0.02 2.97 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -52.67 11.32 21.45 0.24 -52.43 16 8 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 12 N -0.53 -23.03 4.46 -849.31 -3.79 -26.83 16 13 C 0.03 1.02 4.91 86.31 0.42 1.44 16 14 C 0.07 2.27 7.01 72.01 0.50 2.78 16 15 O -0.40 -13.57 10.83 -148.98 -1.61 -15.19 16 16 C 0.08 2.55 6.15 72.01 0.44 2.99 16 17 C 0.04 1.45 2.03 44.93 0.09 1.54 16 18 H 0.05 1.73 6.56 -2.39 -0.02 1.71 16 19 C 0.09 2.93 6.41 71.98 0.46 3.40 16 20 O -0.57 -18.62 12.67 -148.98 -1.89 -20.51 16 21 H 0.06 3.44 6.07 -2.39 -0.01 3.42 16 22 H 0.03 1.33 6.43 -2.39 -0.02 1.32 16 23 H 0.02 1.06 6.58 -2.39 -0.02 1.04 16 24 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 25 H 0.08 3.25 6.49 -2.39 -0.02 3.24 16 26 H 0.03 1.04 6.42 -2.38 -0.02 1.03 16 27 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.06 1.95 7.46 -2.39 -0.02 1.93 16 30 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.03 1.25 6.01 -2.38 -0.01 1.24 16 33 H 0.39 8.75 9.12 -74.06 -0.68 8.07 16 Total: -1.00 -63.93 254.86 -1.32 -65.25 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.44 Total: 14.95 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 3.26 Total: -11.21 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -3.55 Total: -79.25 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -3.50 Total: -35.69 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -63.93 -1.32 -65.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253072613.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.468 kcal (2) G-P(sol) polarization free energy of solvation -63.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds