Wall clock time and date at job start Mon Mar 30 2020 02:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46893 * 109.47091 * 2 1 4 4 C 1.45590 * 110.99962 * 59.33328 * 3 2 1 5 5 C 1.54641 * 108.47091 * 227.97194 * 4 3 2 6 6 S 1.82411 * 110.54510 * 321.26453 * 5 4 3 7 7 C 1.79398 * 106.81222 * 319.26318 * 6 5 4 8 8 C 1.55290 * 109.72675 * 86.88897 * 7 6 5 9 9 C 1.45390 * 109.84919 * 288.76448 * 8 7 6 10 10 H 1.08996 * 108.09921 * 302.09166 * 9 8 7 11 11 C 1.50701 * 108.24610 * 185.17639 * 9 8 7 12 12 H 1.07998 * 119.99988 * 298.70516 * 11 9 8 13 13 C 1.37873 * 119.99734 * 118.70293 * 11 9 8 14 14 N 1.31515 * 120.00230 * 354.78026 * 13 11 9 15 15 Si 1.86808 * 120.00022 * 174.77535 * 13 11 9 16 16 H 1.48501 * 109.47041 * 94.99679 * 15 13 11 17 17 H 1.48497 * 109.47159 * 214.99975 * 15 13 11 18 18 H 1.48505 * 109.46830 * 334.99573 * 15 13 11 19 19 H 1.08996 * 109.46933 * 293.33389 * 1 2 3 20 20 H 1.08999 * 109.47185 * 53.34012 * 1 2 3 21 21 H 1.09005 * 109.47145 * 173.34335 * 1 2 3 22 22 H 1.08993 * 109.47597 * 120.00676 * 2 1 3 23 23 H 1.09004 * 109.46862 * 240.00615 * 2 1 3 24 24 H 1.08992 * 109.63496 * 347.67393 * 4 3 2 25 25 H 1.09001 * 109.63230 * 108.27981 * 4 3 2 26 26 H 1.09006 * 109.26229 * 200.98928 * 5 4 3 27 27 H 1.09006 * 109.22879 * 81.52159 * 5 4 3 28 28 H 1.09006 * 109.42715 * 326.80778 * 7 6 5 29 29 H 1.09002 * 109.38388 * 206.94421 * 7 6 5 30 30 H 1.08998 * 109.40817 * 168.64781 * 8 7 6 31 31 H 1.09000 * 109.34173 * 48.84050 * 8 7 6 32 32 H 0.97000 * 119.99825 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.5399 2.1079 1.1691 5 6 0.9698 3.4681 0.7042 6 16 1.9966 4.1703 -0.6299 7 6 3.7070 3.8608 -0.1858 8 6 4.1359 2.4587 -0.6972 9 6 3.4846 1.4252 0.0912 10 1 3.7576 1.5737 1.1359 11 6 4.0216 0.0875 -0.3485 12 1 3.8838 -0.2410 -1.3681 13 6 4.6889 -0.7168 0.5507 14 7 4.9471 -0.2752 1.7623 15 14 5.2263 -2.4338 0.0482 16 1 6.6349 -2.3944 -0.4204 17 1 5.1178 -3.3475 1.2139 18 1 4.3533 -2.9246 -1.0483 19 1 -0.3633 0.4070 0.9436 20 1 -0.3633 0.6136 -0.8244 21 1 -0.3634 -1.0208 -0.1191 22 1 1.8934 -0.5139 0.8898 23 1 1.8933 -0.5138 -0.8901 24 1 0.7566 1.5310 1.6606 25 1 2.3655 2.2741 1.8612 26 1 0.9543 4.1587 1.5474 27 1 -0.0469 3.3249 0.3380 28 1 3.8127 3.8994 0.8984 29 1 4.3419 4.6220 -0.6392 30 1 5.2172 2.3555 -0.6072 31 1 3.8476 2.3521 -1.7430 32 1 5.4169 -0.8410 2.3949 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260144699.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:38 Heat of formation + Delta-G solvation = 10.511220 kcal Electronic energy + Delta-G solvation = -13551.344785 eV Core-core repulsion = 11445.377296 eV Total energy + Delta-G solvation = -2105.967489 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.08358 -33.44148 -32.20404 -30.72094 -28.62862 -26.16066 -23.62367 -22.38126 -20.47008 -19.18575 -16.61919 -15.76508 -15.05890 -14.41077 -14.24977 -13.84990 -13.69162 -13.04930 -12.55957 -12.28750 -12.00078 -11.57722 -11.37715 -11.06508 -10.84857 -10.69519 -10.59512 -10.28023 -10.12024 -9.79891 -9.64016 -8.94625 -8.78394 -8.59304 -7.26637 -6.63503 -6.15423 -4.17611 2.48522 3.21762 3.30059 3.34015 3.44546 4.32370 4.97522 5.31959 5.56175 5.67078 5.75831 5.84191 5.90676 6.02359 6.14916 6.23772 6.25808 6.33572 6.45684 6.67591 6.85466 6.94593 7.01415 7.18243 7.45487 7.71252 7.78222 7.98524 8.35675 8.60051 8.94858 9.45705 10.92193 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.035215 B = 0.011972 C = 0.010066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.921944 B = 2338.325963 C = 2780.937638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.076 3.924 3 N -0.501 5.501 4 C 0.029 3.971 5 C -0.065 4.065 6 S -0.259 6.259 7 C -0.089 4.089 8 C -0.074 4.074 9 C 0.159 3.841 10 H 0.054 0.946 11 C -0.516 4.516 12 H 0.059 0.941 13 C 0.066 3.934 14 N -0.895 5.895 15 Si 0.889 3.111 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.271 1.271 19 H 0.041 0.959 20 H 0.054 0.946 21 H 0.046 0.954 22 H 0.033 0.967 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.321 4.104 -0.735 6.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.052 4.052 3 N -0.225 5.225 4 C -0.102 4.102 5 C -0.214 4.214 6 S -0.034 6.034 7 C -0.237 4.237 8 C -0.114 4.114 9 C 0.054 3.946 10 H 0.071 0.929 11 C -0.555 4.555 12 H 0.077 0.923 13 C -0.136 4.136 14 N -0.533 5.533 15 Si 0.717 3.283 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.196 1.196 19 H 0.060 0.940 20 H 0.073 0.927 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.096 0.904 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.756 4.786 -1.906 7.724 hybrid contribution 1.118 -2.044 1.774 2.928 sum -4.637 2.742 -0.132 5.389 Atomic orbital electron populations 1.22015 0.98127 1.00266 1.00797 1.21769 0.91000 0.90514 1.01888 1.63552 1.10778 1.12897 1.35284 1.22792 0.99752 0.93812 0.93846 1.23950 1.00486 0.98974 0.98013 1.85368 1.04071 1.74073 1.39850 1.23707 0.94033 1.02758 1.03229 1.20773 0.99577 0.90556 1.00531 1.18525 0.83506 0.94578 0.98023 0.92868 1.21236 1.35587 1.01786 0.96906 0.92320 1.24977 0.95314 0.98376 0.94953 1.69890 1.41177 1.36783 1.05476 0.86613 0.79084 0.84376 0.78270 1.20626 1.21199 1.19565 0.93963 0.92666 0.93501 0.94865 0.90389 0.92013 0.93017 0.91684 0.89298 0.91164 0.89622 0.91799 0.92184 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.64 37.16 0.36 -2.28 16 2 C 0.08 1.62 4.48 -3.83 -0.02 1.60 16 3 N -0.50 -10.80 3.97 -232.50 -0.92 -11.72 16 4 C 0.03 0.56 5.09 -3.67 -0.02 0.54 16 5 C -0.07 -1.10 6.84 38.02 0.26 -0.84 16 6 S -0.26 -4.78 21.11 -107.50 -2.27 -7.05 16 7 C -0.09 -1.67 5.97 38.37 0.23 -1.44 16 8 C -0.07 -1.62 4.90 -29.10 -0.14 -1.76 16 9 C 0.16 3.81 1.88 -72.48 -0.14 3.67 16 10 H 0.05 1.43 5.12 -51.93 -0.27 1.16 16 11 C -0.52 -13.45 5.50 -34.44 -0.19 -13.64 16 12 H 0.06 1.56 7.43 -52.49 -0.39 1.17 16 13 C 0.07 1.76 5.33 -17.82 -0.09 1.67 16 14 N -0.89 -24.93 12.57 55.43 0.70 -24.24 16 15 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 H 0.04 0.68 6.35 -51.93 -0.33 0.35 16 20 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.03 0.79 7.75 -51.93 -0.40 0.38 16 23 H 0.08 1.76 6.73 -51.93 -0.35 1.41 16 24 H 0.06 1.13 5.65 -51.93 -0.29 0.83 16 25 H 0.05 1.11 6.41 -51.93 -0.33 0.77 16 26 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 27 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.07 1.34 7.97 -51.78 -0.41 0.93 16 29 H 0.09 1.44 8.14 -51.77 -0.42 1.02 16 30 H 0.06 1.43 8.08 -51.93 -0.42 1.01 16 31 H 0.06 1.34 8.12 -51.93 -0.42 0.92 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 256.77 15.07 3.87 3.87 Total: -1.00 -26.90 256.77 -8.26 -35.16 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.86 Total: 0.75 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 0.25 Total: -12.48 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.23 Total: -35.95 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -2.27 Total: -7.05 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -26.90 -8.26 -35.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260144699.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.672 kcal (2) G-P(sol) polarization free energy of solvation -26.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds